Critical slowing down in biochemical networks with feedback

Tommy A. Byrd, Amir Erez, Robert M. Vogel, Curtis Peterson, Michael Vennettilli, Grégoire Altan-Bonnet, and Andrew Mugler
Phys. Rev. E 100, 022415 – Published 26 August 2019

Abstract

Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.

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  • Received 1 February 2019
  • Revised 1 July 2019

DOI:https://doi.org/10.1103/PhysRevE.100.022415

©2019 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living Systems

Authors & Affiliations

Tommy A. Byrd1,*, Amir Erez2,*, Robert M. Vogel3, Curtis Peterson1,4, Michael Vennettilli1, Grégoire Altan-Bonnet5, and Andrew Mugler1,†

  • 1Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
  • 2Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA
  • 3IBM T. J. Watson Research Center, Yorktown Heights, New York 10598, USA
  • 4Department of Physics and School of Mathematical and Statistical Sciences, Arizona State University, Tempe, Arizona 85287, USA
  • 5Immunodynamics Group, Cancer and Inflammation Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20814, USA

  • *These authors contributed equally.
  • amugler@purdue.edu

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Issue

Vol. 100, Iss. 2 — August 2019

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