Solvable Sequence Evolution Models and Genomic Correlations

Philipp W. Messer, Peter F. Arndt, and Michael Lässig
Phys. Rev. Lett. 94, 138103 – Published 8 April 2005

Abstract

We study a minimal model for genome evolution whose elementary processes are single site mutation, duplication and deletion of sequence regions, and insertion of random segments. These processes are found to generate long-range correlations in the composition of letters as long as the sequence length is growing; i.e., the combined rates of duplications and insertions are higher than the deletion rate. For constant sequence length, on the other hand, all initial correlations decay exponentially. These results are obtained analytically and by simulations. They are compared with the long-range correlations observed in genomic DNA, and the implications for genome evolution are discussed.

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  • Received 24 September 2004

DOI:https://doi.org/10.1103/PhysRevLett.94.138103

©2005 American Physical Society

Authors & Affiliations

Philipp W. Messer1,2, Peter F. Arndt2, and Michael Lässig1

  • 1Institute for Theoretical Physics, University of Cologne, Zülpicher Str. 77, 50937 Köln, Germany
  • 2Max Planck Institute for Molecular Genetics, Ihnestr. 73, 14195 Berlin, Germany

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Vol. 94, Iss. 13 — 8 April 2005

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