Abstract
We study the fraction of nucleotides involved in the formation of a cactuslike secondary structure of random heteropolymer RNA-like molecules. In the low-temperature limit, we study this fraction as a function of the number of different nucleotide species. We show, that with changing , the secondary structures of random RNAs undergo a morphological transition: for as the chain length goes to infinity, signaling the formation of a virtually perfect gapless secondary structure; while for , which means that a nonperfect structure with gaps is formed. The strict upper and lower bounds are proven, and the numerical evidence for is presented. The relevance of the transition from the evolutional point of view is discussed.
- Received 24 December 2011
DOI:https://doi.org/10.1103/PhysRevLett.109.018102
© 2012 American Physical Society