The Need for Integrated Approaches in Metabolic Engineering

  1. Jay D. Keasling1,2,4
  1. 1Joint Bioenergy Institute (JBEI), Emeryville, California 94608
  2. 2Department of Chemical & Biomolecular Engineering, Department of Bioengineering, University of California, Berkeley, California 94720
  3. 3Department of Bioengineering, University of California, San Diego, California 92093
  4. 4Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
  1. Correspondence: jdkeasling{at}lbl.gov

Abstract

This review highlights state-of-the-art procedures for heterologous small-molecule biosynthesis, the associated bottlenecks, and new strategies that have the potential to accelerate future accomplishments in metabolic engineering. We emphasize that a combination of different approaches over multiple time and size scales must be considered for successful pathway engineering in a heterologous host. We have classified these optimization procedures based on the “system” that is being manipulated: transcriptome, translatome, proteome, or reactome. By bridging multiple disciplines, including molecular biology, biochemistry, biophysics, and computational sciences, we can create an integral framework for the discovery and implementation of novel biosynthetic production routes.



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      1. Cold Spring Harb. Perspect. Biol. 8: a023903 Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved

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