1887

Abstract

A bacterial strain, designated KTW-16, was isolated from the reef-building coral , collected from southern Taiwan. Strain KTW-16 was a Gram-negative, facultatively anaerobic, pale-yellow, non-motile short rod. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain KTW-16 belonged to the genus in the and exhibited 93.7–96.9 % 16S rRNA gene sequence similarity with type strains of species of the genus (96.9 % with JCM 7364). Strain KTW-16 grew at 15–40 °C (optimum 35 °C), at pH 6.0–10.0 (optimum pH 8.0) and with 0–9 % NaCl (optimum 5 %). The predominant cellular fatty acids were Cω7, C cyclo ω8 and C. The major respiratory quinone was Q-10 and the DNA G+C content was 69.1 mol%. The polar lipid profile consisted of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylcholine and several unknown polar lipids. The physiological and biochemical tests allowed clear phenotypic differentiation of the isolate from the type strains of already described species. It is evident from the genotypic, phenotypic and chemotaxonomic analysis that strain KTW-16 should be classified in a novel species of the genus , for which the name sp. nov. is proposed. The type strain is KTW-16 ( = LMG 25392  = BCRC 80106).

Funding
This study was supported by the:
  • Academia Sinica (Award 20082010)
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2011-09-01
2024-04-16
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References

  1. Altenburger P., Kämpfer P., Makristathis A., Lubitz W., Busse H.-J. 1996; Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47:39–52 [View Article]
    [Google Scholar]
  2. Anzai Y., Kudo Y., Oyaizu H. 1997; The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. Int J Syst Bacteriol 47:249–251 [View Article][PubMed]
    [Google Scholar]
  3. Berry A., Janssens D., Hümbelin M., Jore J. P. M., Hoste B., Cleenwerck I., Vancanneyt M., Bretzel W., Mayer A. F. et al. 2003; Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int J Syst Evol Microbiol 53:231–238 [View Article][PubMed]
    [Google Scholar]
  4. Chen W. M., Laevens S., Lee T. M., Coenye T., De Vos P., Mergeay M., Vandamme P. 2001; Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51:1729–1735 [View Article][PubMed]
    [Google Scholar]
  5. Chen M.-H., Sheu S.-Y., Chen C. A., Wang J.-T., Chen W.-M. 2011; Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora palifera . Int J Syst Evol Microbiol 61:1138–1143 [View Article][PubMed]
    [Google Scholar]
  6. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y.-W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [View Article][PubMed]
    [Google Scholar]
  7. Collins M. D. 1985; Analysis of isoprenoid quinones. Methods Microbiol 18:329–366 [View Article]
    [Google Scholar]
  8. Daneshvar M. I., Hollis D. G., Weyant R. S., Steigerwalt A. G., Whitney A. M., Douglas M. P., Macgregor J. P., Jordan J. G., Mayer L. W. et al. 2003; Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. J Clin Microbiol 41:1289–1294 [View Article][PubMed]
    [Google Scholar]
  9. Davis D. H., Doudoroff M., Stanier R. Y., Mandel M. 1969; Proposal to reject the genus Hydrogenomonas: taxonomic implications. Int J Syst Bacteriol 19:375–390 [View Article]
    [Google Scholar]
  10. Deng Z.-S., Zhao L.-F., Xu L., Kong Z.-Y., Zhao P., Qin W., Chang J.-L., Wei G.-H. 2011; Paracoccus sphaerophysae sp. nov., a siderophore-producing, endophytic bacterium isolated from root nodules of Sphaerophysa salsula . Int J Syst Evol Microbiol 61:665–669 [View Article][PubMed]
    [Google Scholar]
  11. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [View Article][PubMed]
    [Google Scholar]
  12. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  13. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. (editors) 1994 Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology;
    [Google Scholar]
  14. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
  15. Hosoya S., Adachi K., Kasai H. 2009; Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals. Int J Syst Evol Microbiol 59:686–690 [View Article][PubMed]
    [Google Scholar]
  16. Kim B.-Y., Weon H.-Y., Yoo S.-H., Kwon S.-W., Cho Y.-H., Stackebrandt E., Go S.-J. 2006; Paracoccus homiensis sp. nov., isolated from a sea-sand sample. Int J Syst Evol Microbiol 56:2387–2390 [View Article][PubMed]
    [Google Scholar]
  17. Kim Y.-O., Kong H. J., Park S., Kang S.-J., Kim K.-K., Moon D. Y., Oh T.-K., Yoon J.-H. 2010; Paracoccus fistulariae sp. nov., a lipolytic bacterium isolated from bluespotted cornetfish Fistularia commeronii . Int J Syst Evol Microbiol 60:2908–2912 [View Article]
    [Google Scholar]
  18. Kimura M. 1983 The Neutral Theory of Molecular Evolution Cambridge: Cambridge University Press; [CrossRef]
    [Google Scholar]
  19. Kluge A. G., Farris F. S. 1969; Quantitative phyletics and the evolution of anurans. Syst Zool 18:1–32 [View Article]
    [Google Scholar]
  20. Kumar S., Tamura K., Nei M. 2004; mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [View Article][PubMed]
    [Google Scholar]
  21. La H.-J., Im W.-T., Ten L. N., Kang M. S., Shin D.-Y., Lee S.-T. 2005; Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludge blanket (UASB) reactor. Int J Syst Evol Microbiol 55:1657–1660 [View Article][PubMed]
    [Google Scholar]
  22. Liu X.-Y., Wang B.-J., Jiang C.-Y., Liu S.-J. 2006; Paracoccus sulfuroxidans sp. nov., a sulfur oxidizer from activated sludge. Int J Syst Evol Microbiol 56:2693–2695 [View Article][PubMed]
    [Google Scholar]
  23. Liu Z.-P., Wang B.-J., Liu X.-Y., Dai X., Liu Y.-H., Liu S.-J. 2008; Paracoccus halophilus sp. nov., isolated from marine sediment of the South China Sea, China, and emended description of genus Paracoccus Davis 1969. Int J Syst Evol Microbiol 58:257–261 [View Article][PubMed]
    [Google Scholar]
  24. Lyman J., Fleming R. H. 1940; Composition of sea water. J Mar Res 3:134–146
    [Google Scholar]
  25. MacFaddin J. F. 2000 Biochemical Tests for the Identification of Medical Bacteria, 3rd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
  26. Maidak B. L., Cole J. R., Lilburn T. G., Parker C. T. Jr, Saxman P. R., Farris R. J., Garrity G. M., Olsen G. J., Schmidt T. M., Tiedje J. M. 2001; The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29:173–174 [View Article][PubMed]
    [Google Scholar]
  27. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [View Article]
    [Google Scholar]
  28. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal K., Parlett J. H. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241 [View Article]
    [Google Scholar]
  29. Nokhal T. H., Schlegel H. G. 1983; Taxonomic study of Paracoccus denitrificans . Int J Syst Bacteriol 33:26–37 [View Article]
    [Google Scholar]
  30. Powers E. M. 1995; Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61:3756–3758[PubMed]
    [Google Scholar]
  31. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  32. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  33. Siller H., Rainey F. A., Stackebrandt E., Winter J. 1996; Isolation and characterization of a new Gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov.. Int J Syst Bacteriol 46:1125–1130 [View Article][PubMed]
    [Google Scholar]
  34. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  35. Tindall B. J. 1990; Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66:199–202 [View Article]
    [Google Scholar]
  36. Tsubokura A., Yoneda H., Mizuta H. 1999; Paracoccus carotinifaciens sp. nov., a new aerobic Gram-negative astaxanthin-producing bacterium. Int J Syst Bacteriol 49:277–282 [View Article][PubMed]
    [Google Scholar]
  37. Urakami T., Tamaoka J., Suzuki K., Komagata K. 1989; Paracoccus alcaliphilus sp. nov., an alkaliphilic and facultatively methylotrophic bacterium. Int J Syst Bacteriol 39:116–121 [View Article]
    [Google Scholar]
  38. Wallet F., Blondiaux N., Foy C. L., Loïez C., Armand S., Pagniez D., Courcol R. J. 2010; Paracoccus yeei: a new unusual opportunistic bacterium in ambulatory peritoneal dialysis. Int J Infect Dis 14:e173–e174 [View Article][PubMed]
    [Google Scholar]
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