Issue 15, 2013

β-Turn sequences promote stability of peptide substrates for kinases within the cytosolic environment

Abstract

A strategy was developed to extend the lifetime of an peptide-based substrate for Abl kinase in the cytosolic environment. Small β-turn structures were added to the peptide's N-terminus to block entry into peptidase catalytic sites. The influence of the size of the β-turn and two covalent cross-linking strategies on the rate of hydrolysis was assessed. The most peptidase-resistant substrate was degraded at a rate of 0.6 pmol mg−1 s−1 and possessed a half-life of 20.3 ± 1.7 min in a Baf/BCR-ABL cytosolic lysate, representing 16- and 40-fold improvements, respectively, over that of a control peptide lacking the β-turn structure. Furthermore, the kcat/KM value of this peptide was 432 μM−1 min−1, a 1.25× increase over the unmodified control, verifying that the added β-turn did not hinder the substrate properties of the peptide. This improved peptide was microinjected into single Baf/BCR-ABL cells and substrate phosphorylation measured. Zero to forty percent of the peptide was phosphorylated in the single cells. In contrast, when the control peptide without a β-turn was loaded into cells, the peptide was too rapidly degraded to detect phosphorylation. This work demonstrates that small β-turn structures can render peptides more resistant to hydrolysis while retaining substrate efficacy and shows that these stabilized peptides have the potential to be of high utility in single-cell enzyme assays.

Graphical abstract: β-Turn sequences promote stability of peptide substrates for kinases within the cytosolic environment

Supplementary files

Article information

Article type
Paper
Submitted
29 Apr 2013
Accepted
13 Jun 2013
First published
14 Jun 2013

Analyst, 2013,138, 4305-4311

β-Turn sequences promote stability of peptide substrates for kinases within the cytosolic environment

S. Yang, A. Proctor, L. L. Cline, K. M. Houston, M. L. Waters and N. L. Allbritton, Analyst, 2013, 138, 4305 DOI: 10.1039/C3AN00874F

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