Abstract
Trained immunity refers to a hyperresponsive functional state of the innate immune system, which is induced by certain stimuli, such as infections or vaccination. Trained immunity plays a key part in a variety of diseases, including cancer and inflammation, and is regulated through epigenetic and metabolic reprogramming of haematopoietic stem and progenitor cells in the bone marrow, giving rise to hyperactive myeloid cells. Nanomaterials inherently interact with phagocytic myeloid cells and are thus ideal platforms with which to regulate trained immunity. In this Review, we discuss the key pathways of trained immunity and investigate nanomedicine strategies to therapeutically regulate trained immunity. Nanomedicine can be applied not only to induce trained immunity to treat cancer or to enhance resistance to infections, but also to manage hyperinflammation and maladaptive trained immunity in a variety of clinical scenarios. We conclude with an outlook to future possibilities and some remaining challenges for nanomedicine approaches in trained immunity regulation.
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Introduction
The clinical translation of the COVID-19 mRNA vaccines has expedited a paradigm shift in the field of nanomedicine, which has been developed from twenty-first century immuno-oncology successes. Rather than focusing on drug delivery approaches designed to evade the immune system, the field has started to embrace an engagement of the innate immune system — the body’s first line of defence against invading pathogens — through nanoparticle–phagocyte interactions1. Here, we refer to a specific application of nanomedicine involving the systemic administration of nanomaterials (size range of 10 nm to 250 nm) to achieve efficient haematopoietic system engagement and therapeutic innate immune regulation. It has long been assumed that immune memory is located only in our immune system’s adaptive arm, allowing effective and antigen-specific immune responses against re-encounters. However, this paradigm has been challenged by increasing evidence for the existence of a primitive innate immune memory, referred to as trained immunity2,3. Upon exposure to a pathogen-associated molecular pattern (PAMP), innate immune cells (and, in particular, myeloid cells) become more responsive to subsequent unrelated infections4. Trained immunity, which was first described in individuals who had been vaccinated with Bacillus Calmette–Guérin (BCG)5 (Box 1), is one of the fastest growing fields in immunology.
Nanomedicine holds great promise for innate immune regulation, and may work well in conjunction with adaptive immune system-directed immunotherapeutic approaches — such as checkpoint blockade6 and chimeric antigen receptor T cells, for example — through T cell co-stimulation7 or by modifying the tumour microenvironment6. In particular, trained immunity induction has the potential to mature into a compelling therapeutic approach. The use of microbial compounds to boost an immune response was explored in the late 1800s by William Coley8, who observed spontaneous tumour remission in a cancer patient with a concurrent Streptococcus pyogenes infection, which led him to hypothesize that deliberately injecting patients with this microbe could induce tumour remission9. However, owing to variable results and the obvious risk of life-threatening infections, the method quickly fell victim to the successes of radiation and chemotherapy10. Nevertheless, Coley’s work inspired the search for alternative applications of boosting innate immunity using microbe-derived therapeutics. In the 1970s, the BCG vaccine, which was originally developed as a vaccine against tuberculosis, was approved for treating high-risk non-muscle-invasive bladder cancer11 (Box 1). This specific application is safe because the urothelium does not absorb BCG and harmful systemic uptake or bacteraemia are prevented. However, to take full advantage of the therapeutic potential of trained immunity, innovative means of safely inducing it must be developed. Trained immunity owes its longevity to progenitors in the bone marrow12,which undergo metabolic and epigenetic rewiring to continue producing ‘trained’ myeloid cells6, rendering these cells hyperresponsive. Therefore, technologies must be developed that directly engage myeloid progenitors13.
Nanomaterials inherently interact with phagocytic myeloid cells, and are thus ideal tools to regulate trained immunity by delivering drugs to myeloid cells and their progenitors in the bone marrow, including small molecules6,7, polymers14, RNA therapeutics15 and immunoregulatory proteins16. Nanomedicine-based activation of trained immunity will find use in cancer treatment and will increase resistance to infection. Conversely, inhibition of trained immunity has therapeutic benefits in conditions that are characterized by an exacerbated immune response, such as autoimmune disorders, cardiovascular disease, sepsis, transplant rejection and acute respiratory distress syndrome.
The innate immune system
The immune system of vertebrates can be divided into an innate arm and an adaptive arm. The innate arm consists of external defences (physical barriers such as the skin and stomach acid) and internal defences17. Internal defences are activated by pattern recognition receptors of innate immune cells. These receptors can sense PAMPs in case of infection, or damage-associated molecular patterns (DAMPs), which are non-microbial triggers. Once activated, innate immune cells set in motion the complement system, which ultimately results in the killing of pathogens or of infected or malignant cells through phagocytosis. Phagocytosis is a type of endocytosis — a process by which a cell engulfs a particle. Although most cells are capable of phagocytosis, it is the main function of some cells, including myeloid innate immune cells, such as monocytes, macrophages, dendritic cells and neutrophils18. Therefore, innate immunity provides a nonspecific, efficient and rapid reaction to protect the host. Certain innate immune cells, such as dendritic cells and macrophages, can also initiate an antigen-specific adaptive immune response through a combination of antigen presentation (signal 1), co-stimulation (signal 2) and cytokine regulation (signal 3), which takes several days to develop19,20,21,22.
The immune cells of our host defence system are the result of haematopoiesis, that is, the highly dynamic process of blood cell production, which involves the generation of leukocytes from haematopoietic stem and progenitor cells (HSPCs) residing in the bone marrow23. Innate immune cells include all leukocytes from the myeloid lineage, such as monocytes, macrophages and granulocytes, as well as some leukocytes from the lymphoid lineage. Besides myeloid cells, HSPCs also give rise to T and B lymphocytes, which are part of the adaptive immune system, and non-leukocytes, including thrombocytes and erythrocytes24.
A growing body of evidence indicates that the innate immune system displays memory characteristics2. DAMPs and PAMPs can induce functional reprogramming of innate immune cells, resulting in an altered response towards a subsequent challenge with a related or unrelated stimulus. This concept is referred to as trained immunity, in which ‘trained’ cells display a stronger response upon secondary stimulation, whereas the terms ‘tolerance’ or ‘immune paralysis’ describe muted immune responses3. Memory function of the adaptive immune system is mediated by gene recombination; by contrast, trained innate immunity relies on epigenetic reprogramming of transcriptional pathways. Shifts in cellular metabolism underlie these epigenetic changes. Myeloid-derived monocytes and macrophages were first found to display trained and tolerant phenotypes25. We now know that neutrophils, natural killer (NK) cells and non-leukocytes, such as epidermal cells, also display innate immune memory features26,27,28. Trained immunity can last for months to a few years and is systemically regulated through myelopoiesis. Indeed, certain HSPC populations undergo epigenetic rewiring, giving rise to ‘trained’ myeloid cells29.
Targeting trained immunity
Trained immunity can be targeted at multiple levels, which should all be considered in the design of nanomedicines, including whole-body level, system or organ-system level, cellular level and subcellular level. On a whole-body level, myeloid cell-rich haematopoietic organs, such as the spleen and bone marrow, are important targets (Fig. 1a). HSPCs reside in the bone marrow, where they can be transcriptionally reprogrammed, for example, upon BCG vaccination, resulting in a persistent trained phenotype29. Therefore, nanomaterials that can induce trained immunity in the bone marrow are particularly interesting.
The haematopoietic system
Monocytes and macrophages have pivotal roles in innate immune memory, and the molecular mechanisms underlying trained immunity in these cells have been thoroughly investigated25,30 (Fig. 1b). Moreover, these cells are professional phagocytes, guaranteeing the uptake of nanomaterials31. Immune memory has also been described in neutrophils, which make up a large proportion of myeloid cells. BCG-induced and β-glucan-induced trained immunity further increases the generation of these cells (granulopoiesis)12,32, which can result in anti-tumour and antimicrobial activity27,33, highlighting the therapeutic potential of neutrophil targeting. Dendritic cells, which also exhibit immune memory34, can modulate both the innate and adaptive arms of the immune system35, making them a promising trained immunity target. Furthermore, non-myeloid innate immune cells, such as NK cells and other innate lymphoid cells, can undergo antigen-independent reprogramming, displaying trained immunity features36,37,38,39,40. However, these cells do not possess phagocytic capacities, so an active targeting approach would be required, for example, through surface functionalization of nanomaterials with ligands specific to CD56. Targeting mature innate immune cells has the advantage of delivering immediate effects; however, more substantial therapeutic benefits may be achieved by HSPC reprogramming, because the durability of trained immunity relies on these cells12,29. Although HSPCs make up only a tiny proportion of immune cells, they give rise to the entire immune landscape and are much longer-lived than monocytes or neutrophils24.
Cellular regulation
On a cellular level, a selection of receptors can be targeted to induce or inhibit trained immunity (Fig. 1c; Table 1). In particular, pattern recognition receptors for PAMPs have been extensively studied, because trained immunity was first described as an altered immune response after pathogen encounters. For example, the C-type lectin receptor Dectin-1 is involved in antifungal immunity and binds various β-glucans, each resulting in different downstream effects41. β-Glucan derived from the cell wall of Candida albicans induces trained immunity25, whereas laminarin, a mixture of short-chain β-glucans from seaweeds, competitively inhibits agonistic β-glucan binding to dectin 1 (refs41,42). These findings create opportunities for developing β-glucan nanoformulations. Activated Dectin-1 subsequently triggers phosphoinositide 3-kinase (PI3K) signalling, which is negatively regulated by SH2 domain-containing inositol 5′-phosphatase 1 (SHIP1)43 (Table 2). Pharmacological inhibition of SHIP1 by 3α-aminocholestane enhances Candida albicans-induced trained immunity44. SHIP1 is also the primary target of microRNA-155 (miR-155)45, and miR-155 overexpression leads to repression of SHIP1 and subsequent PI3K/Akt activation. Therefore, miR-155-containing polymeric nanoparticle formulations46 may allow trained immunity amplification.
The nucleotide-binding oligomerization domain-containing protein 2 (NOD2) is a pattern recognition receptor involved in trained immunity induction. This intracellular receptor recognizes bacterial peptidoglycans47 by binding to muramyl dipeptide (MDP), which is present on Gram-positive and -negative bacteria. For example, the BCG vaccine induces trained immunity through NOD2 activation5. In a murine melanoma model, pharmacological stimulation of NOD2 by nanobiologics (which are apolipoprotein A1-based nanomaterials that are exclusively composed of natural molecular building blocks, decorated with muramyl tripeptide (MTP)) induces trained immunity and inhibits cancer growth6. Similarly, Toll-like receptor 4 (TLR4) can be targeted for trained immunity modulation. DAMPs, such as oxidized low-density lipoprotein (oxLDL), lipoprotein(a), urate, vimentin and high-mobility group box 1 (HMGB1), are endogenous stimuli that induce trained immunity7,48,49,50 and that can be recognized by TLR4 (ref.51). This receptor can be blocked by the small-molecule inhibitor TAK242 (resatorvid)52 and, thus, oxLDL-induced trained immunity can be suppressed by resatorvid53.
In addition, cytokines and metabolites play an important part in innate immune memory regulation, making them attractive targets for immunotherapy. Upon trained immunity induction, granulocyte–macrophage colony-stimulating factor (GM-CSF) signalling enhances progenitor proliferation in the bone marrow, and pharmacologic inhibition of GM-CSF counteracts this process12. A similar effect can be established through pharmacologic inhibition of interleukin-1 (IL-1) by the IL-1 receptor antagonist anakinra12. The metabolite mevalonate binds and activates the extracellular insulin-like growth factor 1 receptor (IGF1R), which leads to downstream mechanistic target of rapamycin (mTOR) signalling and upregulated glycolysis, resulting in histone modifications of pro-inflammatory enzymes and a trained immunity phenotype54. This process can be prevented by an inhibitor or antibody targeted to IGF1R54.
Metabolic targets
Receptor binding often results in the activation of specific metabolic pathways (Fig. 1d), which can, in turn, also be a target for trained immunity modulation. For example, induction of trained immunity strongly increases glycolysis, which can be reduced by inhibition of hexokinases with 2-deoxy-d-glucose55. Glycolysis is not only controlled by enzyme activity, but also by mTOR signalling, and can therefore be inhibited through pharmacologic mTOR interference with rapamycin, metformin or ascorbate4. For example, nanoformulations containing rapamycin inhibit trained immunity and prolong graft survival in a murine heart allograft model7. Interference with cholesterol metabolism, for example, through 3-hydroxy-3-methyl-glutaryl-coenzyme A (HMG-CoA) reductase inhibition with statins54, reduces mevalonate accumulation and subsequent IGF1R and mTOR activation. The lipophilic nature of statins, such as fluvastatin and simvastatin, facilitates their incorporation into lipid-based nanoformulations56. For example, simvastatin-loaded reconstituted high-density lipoproteins (S-HDL) are taken up by aortic plaque macrophages in atherosclerosis-prone mice57,58,59. Interestingly, treatment with S-HDL reduces atherosclerotic plaque inflammation in mice and translational animal models59.
In addition to glycolysis and cholesterol synthesis, glutaminolysis is upregulated in trained immunity. Glutamine is processed to glutamate, which is subsequently converted to α-ketoglutarate or succinate, which are metabolites in the tricarboxylic acid (TCA) cycle. Succinate oxidation results in the accumulation of fumarate, which inhibits histone demethylases, resulting in increased histone methylation of pro-inflammatory cytokines60. This process can be mitigated by using bis-2-(5-phenylacetamido-1,2,4-thiadiazol-2-yl)ethyl sulfide (BPTES), a glutaminase inhibitor60. Trained immunity can also be modulated by directly targeting the TCA cycle, for example, with dimethyl malonate, which is an inhibitor of succinate oxidation61 that can be incorporated into a nanobiologic platform62. By inhibiting succinate oxidation, dimethyl malonate prevents fumarate accumulation and its downstream epigenetic effects.
Epigenetic targets
The epigenome forms the molecular basis of trained immunity and can be modified by modulating the activity of epigenetic enzymes. Various types of cancer also display maladaptive epigenetic rewiring, and several epigenetic inhibitors have already been approved or tested in clinical trials for the treatment of haematologic malignancies and solid tumours63. Nanomedicine can be applied to redirect epigenetic drugs to innate immune cells for trained immunity modulation, allowing fine-tuning of the biodistribution and cellular uptake of drugs.
A specific epigenetic hallmark of trained immunity is acetylation of histone 3 lysine 27 (H3K27ac) at distal enhancers64 (Fig. 1e). Histone acetylation renders chromatin more accessible, facilitating gene transcription. During induction of trained immunity, these histone modifications are typically found on genes encoding pro-inflammatory cytokines and metabolic enzymes. Acetylation levels are dependent on the presence of histone acetyltransferases and deacetylases, which can be used as therapeutic targets. For example, (–)-epigallocatechin-3-gallate (EGCG), a histone acetyltransferase inhibitor, inhibits histone modifications associated with β-glucan-induced trained immunity44. In contrast to histone acetylation, histone methylation can be either repressive or activating. Histone methyltransferases can be inhibited with 50-deoxy-50-(methylthio)adenosine (MTA)25. Methylation of DNA, which is associated with repressed gene transcription, is regulated by DNA methyltransferases, which can be inhibited by azacitidine encapsulated in a polylactide-co-glycolide (PLGA)–polyethylene glycol (PEG) nanoscale delivery system. Here, incorporation into the nanomaterial improves the therapeutic effect by enhancing drug stability and increasing cellular uptake65, demonstrating the potential of nanoformulations to increase epigenetic drug efficacy.
Histone modifications can also be altered by long non-coding RNA (lncRNA). Upon β-glucan stimulation, a specific class of lncRNAs, called ‘immune gene-priming lncRNAs’ (IPLs), are upregulated, facilitating H3K4 trimethylation of cytokine promotors66. Here, topologically associated domains and the specific 3D structure of IncRNAs allow interaction with multiple innate immune genes67. The activity of UMLILO, a prototype IPL, can be inhibited by siRNA66.
The in vivo behaviour of nanomaterials
Nanomaterials can interact with the haematopoietic system, which is responsible for leukocyte production, and with the mononuclear phagocyte system, which can be exploited in the regulation of trained immunity. In particular, the bone marrow, which has rarely been the target tissue in nanomedicine studies, is important in trained immunity. Although uptake of nanoliposomes in the bone marrow has previously been reported68, targeting the bone marrow for immune regulation by nanomedicine has only recently been explored6,69. The quest to improve drug delivery by increasing the percentage of injected drug dose at the site of action upon intravenous administration has long been central to the nanomedicine community, particularly to increase drug deposition in cancerous and inflammatory lesions. This approach requires the nanodrugs to have a long circulation half-life, which can be challenging to achieve with nanomaterials, because they are usually rapidly eliminated through complement activation and phagocytes. The blood circulation time of nanomaterials can be increased through surface coating, for example, the coating of liposomes with hydrophilic polymers, such as PEG70, with an optimal PEG density of approximately 10 mol% (we note that very high PEG densities decrease circulation half-lives)70. Typically, PEGylation is achieved by formulating self-assembled nanoparticles that include PEG-functionalized phospholipids71 or polymers72. Alternatively, nanocrystalline materials, such as gold73, iron oxide74 or semiconductor nanocrystals75, can be applied to the material post-synthesis.
The mononuclear phagocyte system and nanoparticle clearance
Drug delivery to lesions relies on high vascular permeability and long blood circulation half-lives, which can be achieved by avoiding premature elimination by the mononuclear phagocyte system. By contrast, nanomedicines intended to regulate trained immunity require efficient interaction with myeloid cells. Therefore, the affinity of nanomaterials for phagocytes should not be prevented, but rather exploited, which necessitates in-depth knowledge of the in vivo behaviour of nanomaterials. Most nanomedicine platforms are self-assembled systems based on lipid nanoparticles comprised of phospholipids and/or mixtures of other fatty molecules, or polymeric nanoparticles, which are typically built from block copolymers. The therapeutic payload of small molecules, RNA or proteins, for example, is usually integrated by a self-assembly process. The in vivo behaviour of such platforms is typically assessed by investigating a single nanoparticle component, that is, either the nanomaterial or the therapeutic payload. Although different components can be simultaneously labelled, for example, by using different radioisotopes or fluorophores56 for nuclear or optical detection, respectively, nanoparticle integrity or the exchange of components with blood constituents cannot be studied using standard techniques, such a gamma counting or confocal laser scanning microscopy. However, imaging methods, in combination with ex vivo approaches, have been developed to holistically study nanoparticle behaviour in preclinical models (Box 2).
The nanoparticle in vivo journey
The in vivo fate of nanomaterials depends on material properties, such as size and surface coating, and features of the circulatory system, including endothelial permeability and neovascularization. These parameters dictate nanoparticle aggregation, organ and tissue uptake, as well as clearance rates and elimination pathways76,77. Upon intravenous administration, nanoparticles are transported in the blood to the right ventricle of the heart, into the lung capillaries and back to the left ventricle, before they are distributed to vital organs in the body, such as the brain, liver and kidneys, via the aorta. In general, intravenously infused nanoparticles do not extravasate from regular blood vessels lined with an impermeable endothelium or the blood–brain barrier. Therefore, in healthy individuals, nanoparticles accumulate in organs with high microvascular permeability and/or blood filtration systems, such as in the kidneys, liver and spleen. Nanoparticles can also accumulate in tumours and inflammatory lesions, including atherosclerotic plaques, which are characterized by ongoing neovascularization and increased (micro)vascular permeability78.
The key nanoparticle parameters that dictate in vivo behaviour are size, aggregation, surface charge and shape (Fig. 2). Differently sized quantum dots (semiconductor nanocrystals with size-dependent fluorescent properties) have been used to determine the size dependency of clearance, showing that nanomaterials with a hydrodynamic radius smaller than 6–8 nm are cleared within minutes by the kidneys and are excreted via the bladder79,80. Kidney clearance is facilitated by the glomerular filtration membrane, which is a semipermeable membrane that filters blood. Therefore, small nanoparticles have little potential for myeloid cell targeting and trained immunity regulation. Conversely, medium-sized nanoparticles (10–100 nm) typically display longer blood circulation half-lives because they do not pass through the glomerular filtration barrier. Biodistribution studies show that medium-sized nanoparticles accumulate in (and are cleared by) the liver and spleen. These organs are part of the mononuclear phagocyte system, which filters toxins from the blood. Küpffer cells, which are the local macrophages of the liver, form a protective barrier through their scavenger and phagocytic functions, removing foreign debris and particles from portal blood flow through pattern recognition receptor interactions76,81,82. In addition to Küpffer cells, B cells are involved in phagocytosis-mediated removal of certain nanomaterials, for example PEGylated quantum dots81. The spleen performs a role similar to that of the liver. Here, macrophages in the red pulp region are the primary phagocytic force driving nanoparticle removal. To achieve long blood circulation times of nanomedicines for lesion targeting, elimination by the mononuclear phagocyte system has to be prevented. Nanoparticle sizes of around 75–100 nm are optimal for long circulation times68; by contrast, larger nanoparticles (100–250 nm) have much shorter circulation times owing to complement activation and more efficient clearance by the liver and spleen. Rapid removal can also be a result of nanoparticle aggregation upon intravenous administration, which causes the nanoparticles to become trapped in pulmonary capillaries83.
Nanodelivery platforms
Nanodelivery platforms can be applied to route different classes of therapeutic payloads to myeloid cells and their progenitors in the bone marrow and spleen. For example, liposomes84 have been optimized by the drug delivery community to efficiently deliver chemotherapeutics to tumours, thereby increasing the therapeutic index of drugs and reducing side effects. The blood circulation times of liposomes68 can be increased by coating with PEG and other surface-functionalization strategies65. Similarly, long-circulating polymeric nanoparticles have been designed, made of diblock copolymers from PEG and biodegradable polymers, such as PLGA. By integrating PEG, recognition by the mononuclear phagocyte system and premature removal by Küpffer cells in the liver can be avoided85. The targeting of myeloid cells, particularly macrophages, has been originally explored in the context of cardiovascular disease86,87 and rheumatoid arthritis88. We note that studies focusing on the specific targeting of haematopoietic organs are scarce. Following the discovery that the spleen acts as a reservoir for monocytes89, a lipid nanoparticle has been designed to deliver siRNA (targeting CCR2) to the spleen and bone marrow, with the aim of preventing monocytes from migrating to sites of inflammation90. In a heart transplant mouse model, mTOR-inhibiting nanobiologic therapeutics could efficiently induce immunological tolerance by targeting myeloid cells and their progenitors in the bone marrow, resulting in prolonged allograft survival7. This approach enabled precision inhibition of inflammation. A similar nanobiologic technology could also be applied to induce trained immunity to combat cancer. Both studies6,7 demonstrated that nanobiologic-facilitated regulation of trained immunity is caused by metabolic, epigenetic and transcriptomic changes of HSPCs in the bone marrow6.
A variety of nanomedicine platforms have been developed for drug delivery. Here, we focus on those with the highest translational potential, that is, lipid-based, polymeric, lipoprotein, viral and protein-polymer nanoparticles (Fig. 3). Lipid-based nanoparticles consist of amphiphilic (phospho)lipids, which self-aggregate or self-organize owing to the dual features of these molecules, which consist of a polar, water-soluble group attached to a water-insoluble hydrocarbon chain. The most widely studied lipid-based nanomaterials are vesicles called liposomes, which are bilayered structures encapsulating an aqueous lumen. Liposomes are highly suitable to deliver hydrophilic payloads, although their true potential has been reached with the development of different loading methods. For example, liposomal doxorubicin integrates crystals of the drug, achieving very high encapsulation efficiencies of 98%91. Micelles are also lipid-based nanomaterials composed of spherical lipid aggregates, in which the amphiphilic lipids are organized with their apolar tails positioned in the core and the hydrophilic headgroups facing the aqueous exterior. Nanoemulsions are essentially ‘swollen micelles’, which additionally integrate apolar fatty molecules into their core, which is covered by a monolayer of amphiphilic lipids. Nanoemulsions and micelles are therefore suitable for the delivery of lipophilic payloads. A lipid-based platform also enabled the first approved RNA interference (RNAi) therapeutic92, and lipid nanoparticles are also integrated93 in COVID-19 mRNA vaccines94,95.
Polymeric nanoparticles composed of amphiphilic block copolymers include polymeric vesicles called polymersomes96, nanostructures with a micellar morphology97, nanoemulsions consisting of a lipophilic matrix covered by a monolayer of block copolymers98, as well as polymeric nanoparticles for RNA delivery99. Lipoprotein-derived and -inspired nanomaterials include high-density lipoprotein87, low-density lipoprotein and microemulsion-like structures, as well as a apolipoprotein A1-based nanobiologic platform56. Viral and virus-based delivery technologies have shown great potential for gene therapy and vaccination, but can also be applied for the delivery of small-molecule drugs and proteins100,101. Finally, nanostructures assembled from immunomodulatory proteins or polymers102,103 are made of building blocks that exhibit specific immunomodulatory features.
All of these platforms can be adjusted for the delivery of immunoregulatory payloads, albeit at different efficiencies (Fig. 3). For example, viral nanoparticles are inherently suitable for nucleic acid drug delivery, but can also be adopted for the delivery of small-molecule drugs. Liposomes are most suited for incorporating payloads in the aqueous lumen, but they can also carry lipophilic drugs in the phospholipid bilayer. It is important to harmonize the therapeutic goal, immunoregulatory payload and nanoparticle type when designing trained-immunity-regulating nanomedicines, and to take into account the drug’s mode of action. For example, mRNA requires efficient cytosolic delivery to enable ribosomes to efficiently read the code and translate it into a protein. However, nanomaterials are usually endocytosed by cells and therefore, end up in cellular vesicles, called endosomes. Thus, endosomal escape is a prerequisite for and integral part of mRNA–lipid nanoparticle technologies104. There are different types of endocytosis, of which receptor-mediated (or clathrin-mediated) endocytosis is the most relevant mechanism for nanoparticle uptake. Small nanoparticles (that is, <60 nm) can also be taken up through caveolin-mediated endocytosis77. In addition, nanoparticle merging with the cell membrane, pinocytosis and contact-facilitated delivery have been proposed as mechanisms by which nanomaterials interact with cells105.
Immunostimulatory polymers
A range of immunomodulatory polymers can serve as foundational building blocks of trained immunity-inducing nanomaterials. For example, nanoparticles exclusively composed of natural polymers, such as chitosan or hyaluronan, may innately promote trained immunity106. The bacterial wall consists of peptidoglycans, which are recognized by phagocytes, inducing an immune response through NOD2 activation107. Although systemic administration of such immune-activating polymers is unattractive, nanomaterial-based formulations allow controlled exposure and reduce systemic toxicity. These immunostimulatory molecules could also be templated onto nanoparticle scaffolds or function as building blocks, either by generating copolymers or through crosslinking methods108.
Immunoregulatory proteins
Cytokines are key regulators of trained immunity; for example, GM-CSF and IL-1β promote trained immunity, and many other cytokines are currently under investigation. Cytokine-based proteins (or peptides) can be incorporated into nanomedicines; for example, polymeric nanoparticles can deliver the inflammation-resolving peptide Ac2-26 (refs16,109). Cytokine receptors are typically present on the cell surface, and therefore, phagocytosis (intracellular delivery) may compromise cytokine function. To prevent phagocytosis, polymeric nanoparticles can be decorated with collagen-targeting moieties to promote extravascular entrapment and avoid uptake by macrophages109. Alternatively, nanoparticles can be surface-decorated to allow cytokines to interact freely with cell surface receptors.
Nucleic acid drugs
The development of mRNA vaccines against COVID-19 has firmly established nanotechnology’s utility in medicine. Lipid nanoparticle technology allowed the development of highly effective mRNA vaccines in record time94,95. Advances in lipid nanoparticle technology (in particular, the development of ionizable lipids) and in mRNA technology have forever changed the way vaccines will be developed110,111. As an alternative to lipid nanoparticles, viral vectors can be used to deliver nucleic acids, a strategy applied for the delivery of DNA in AstraZeneca’s SARS-CoV-2 vaccine112. mRNA can also be delivered to myeloid cells to induce protein expression56,113,114. Similarly, other RNA-based drugs have potential for trained immunity regulation, including small interfering RNA (siRNA), microRNA (miRNA), and long non-coding RNAs (lncRNA). At varying efficiencies, all of these RNAs could be integrated into lipid or polymeric nanoparticles, for example, to silence a (hub) gene involved in crucial metabolic or epigenetic pathways involved in trained immunity using siRNA or miRNA, or to induce immunoregulatory proteins using mRNA15.
Small molecules
A range of metabolic and epigenetic pathways have been identified to regulate trained immunity (Fig. 1), and a wealth of small-molecule inhibitors have been shown to inhibit trained immunity in vitro. However, delivery of these molecules to the myeloid cell compartment will require the development of targeting strategies. Water-soluble compounds can be incorporated into the aqueous interior of liposomes or polymersomes, whereas micelles and nanoemulsions can carry lipophilic molecules. For example, prodrugs can be modularly integrated into apolipoprotein A1-based nanobiologics62, allowing greater than 80% to 90% integration of prodrug derivatives of diethylmalonate and rapamycin. Small-molecule drugs can also be integrated into viral nanoparticles. Similarly to small-molecule inhibitors, immunostimulatory molecules can be delivered by nanoparticles. Decorating the surface of nanoparticles with immunostimulatory molecules may be an efficient way to modulate trained immunity, as for nanobiologics decorated with muramyl dipeptide6.
Therapeutic applications
Nanomedicine approaches can be applied to reroute trained-immunity-regulating drugs to myeloid (progenitor) cells to either promote trained immunity or to prevent its induction (Fig. 4). Additionally, trained-immunity-regulating nanotherapies may display direct, pleiotropic pro- or anti-inflammatory effects.
Trained immunity-promoting nanotherapeutics
Trained immunity is characterized by quantitatively and qualitatively enhanced innate immune responses owing to metabolic and epigenetic rewiring of the myeloid cell compartment. Trained immunity can be induced to increase immunological resistance against a range of infections, including possibly against SARS-CoV-2, or to combat cancerous malignancies.
Infection and COVID-19
Several pathogens and vaccines can induce trained immunity and enhance the immune response to a subsequent encounter with an unrelated pathogen, and therefore, inducing trained immunity is a promising approach to combat infections. For example, BCG vaccination has been proposed as a strategy to reduce COVID-19-related morbidity and mortality115,116,117, and retrospective observational studies showed that fewer health-care workers with a history of BCG vaccination118 showed positive serology to SARS-CoV-2 (IgG), as compared to individuals without BCG vaccination. In another retrospective study, it has been shown that a recent (that is, less than 5 years old) vaccination with BCG does not correlate with hyperinflammation and is not associated with increased incidence of symptoms during the COVID-19 outbreak in the Netherlands119. Furthermore, in a double-blind randomized controlled trial, BCG vaccination led to an 80% reduction of viral respiratory infections in 200 elderly individuals120. Although this trial did not include SARS-CoV-2 infection, together these studies support the hypothesis that BCG vaccination may provide nonspecific protection against infections. Ongoing randomized controlled trials (NCT04659941, NCT04384549, NCT04537663) will shed a light on the potential of BCG vaccination in protection against infections, and vaccines eliciting trained immunity may further mitigate the impact of emerging pathogens beyond SARS-CoV-2.
Overcoming immune paralysis
In addition to infection prevention, trained-immunity-inducing agents might also be used to overcome immune paralysis, a condition that often occurs in individuals with sepsis. Immune paralysis is characterized by a functional state in which immune responses are muted as an evolutionary mechanism to prevent damage caused by long-lasting inflammatory responses121. Through similar mechanisms, immune paralysis also occurs after severe hyperinflammatory episodes as a result of cardiovascular events, such as stroke or myocardial infarction. Therefore, individuals suffering from immune paralysis become susceptible to (secondary) infections, such as pneumonia, which is a major cause of death in individuals hospitalized because of sepsis or a cardiovascular event122,123,124. β-Glucan has the potential to revert immune paralysis, as assessed by ex vivo stimulation of monocytes from intensive-care sepsis patients125. To overcome immune paralysis in vivo, sophisticated therapies must be developed to restore the balance between pro- and anti-inflammatory pathways. These therapies could, for example, be based on β-glucan-derivatives or immunoregulatory proteins such as GM-CSF and IL-7 (ref.122). We envision therapeutic opportunities for trained-immunity-inducing nanotherapies in individuals suffering from immune paralysis owing to sepsis, stroke, myocardial infarction or other acute inflammatory conditions that lead to immune paralysis.
Overcoming immunosuppression in cancer
Tumours escape destruction by the immune system through a process called immunoediting, which interferes with several aspects of normal immune activation126. First, tumour cells lose their ability to effectively present antigen (signal 1) owing to downregulation of major histocompatibility complex (MHC) molecules or presentation of mutated and thus unrecognizable antigens. Functional antigen presentation would be required to trigger anti-tumour T cell responses. Second, tumours disrupt the delicate balance of co-stimulatory and co-inhibitory signals (signal 2), further impairing T cell activation127,128. This loss of immunogenicity is exemplified by the upregulation of programmed cell death 1 ligand 1 (PDL1) by tumour cells. PDL1 is a co-inhibitory signal that prevents T cell-mediated tumour cell killing129. Immunotherapies, such as chimeric antigen receptor T cell therapy and checkpoint inhibition, focus on the adaptive arm of the immune system, targeting signals 1 and 2. However, components of the innate immune system are also involved, generating an immunosuppressive tumour microenvironment consisting of tumour-associated myeloid cells and myeloid-derived suppressor cells, reducing the effectiveness of the abovementioned immunotherapies130. The imbalance of anti-tumour and pro-tumour myeloid cells in the tumour microenvironment stems, in part, from their aberrant production in the bone marrow131,132. In response to cytokines and growth factors produced by tumour cells133, the bone marrow produces immature cells, which are ‘polarized’ following their arrival in the tumour microenvironment to assist in sustaining the immunosuppressive milieu, in essence creating an inescapable positive feedback loop. This cancer-mediated immune cell modulation by HSPCs in the bone marrow may be counteracted and/or reversed by trained immunity induction. Rebalancing innate immune cell production bias from aberrant haematopoiesis to ‘trained’ myelopoiesis may overcome the immunosuppressive tumour microenvironment134.
The trained immunity inducer BCG is used as immunotherapy in individuals with non-muscle-invasive bladder cancer134. This intravesical treatment induces a local immune response that is based on the activation of trained immunity19. Because drugs administered to the bladder are not systemically distributed in the body, BCG, a live bacterium, can be safely applied. In addition to this local effect, a systemic effect has been reported, highlighted by the increased production of several key trained immunity cytokines by blood-derived monocytes135. To develop bone-marrow-engaging, trained-immunity-inducing nanotherapeutics that can be safely applied intravenously, we decorated nanobiologics with the smallest molecular structure of BCG capable of inducing trained immunity, that is, the NOD2-activating molecule muramyldipeptide (MDP)6. Screening of a library of nanobiologics surface-functionalized with MDP identified a formulation, named MTP10-HDL (Fig. 5a), with potent trained-immunity-inducing features (Fig. 5b) and a favourable biodistribution profile. Upon intravenous administration, MTP10-HDL immunotherapy significantly inhibited tumour growth and sensitized the resistant B16F10 melanoma tumour mouse model to checkpoint inhibition therapy (Fig. 5c). Furthermore, the anti-tumour effect of this nanobiologic immunotherapy is transferable through bone marrow transplantation into untreated mice. In-depth analysis of the bone marrow uncovered a shift in bone marrow immune cell production towards ‘trained’ myelopoiesis. The resulting increase in ‘trained’ monocytes and neutrophils rebalanced the tumour microenvironment, leading to tumour growth inhibition6,33. Similarly, β-glucan has been shown to prophylactically induce trained immunity against cancer, achieving anti-tumour responses perpetuated by innate immune training through granulopoiesis and neutrophil reprogramming.
Trained immunity as an adjuvant
Trained-immunity-induced activation of the innate immune system could also enhance the efficacy of cancer vaccines. Adjuvant technology for most infection-preventing vaccines consists of potent pattern recognition receptor ligands, which are locally injected with the poorly immunogenic vaccine antigens to kick-start the immune cascade136. In contrast to classical vaccines that use foreign antigens, therapeutic cancer vaccines use self-antigen and have to overcome the immunosuppressive tumour microenvironment. The additional immunological boost provided by trained immunity induction could be advantageous in overcoming this hurdle.
Trained immunity induction as an anti-cancer strategy has been established for BCG, β-glucan and the trained immunity-inducing nanobiologic immunotherapy. Nanomedicine strategies could also be based on a clinically used oncolytic virus coding for GM-CSF. This oncolytic virotherapy, called talimogene laherparepvec (T-VEC), inhibits histone deacetylase, and has considerable off-target effects, resulting in remission of metastases, which is often contributed to immunogenic cell death. Trained immunity induction through GM-CSF signalling could be a key mechanism in the observed remission137. In addition, encapsulation of other trained immunity inducers, such as β-glucan and epigenetic drugs, could be effective.
Trained immunity-inhibiting nanotherapeutics
Many immune-mediated conditions could be combatted through the prevention or reversal of ‘dysfunctional’ trained immunity.
Inflammatory disease
Maladaptive trained immunity mechanisms have been reported in atherosclerosis, a chronic inflammatory disease, which is the main underlying cause of cardiovascular pathologies. Non-microbial stimuli relevant to atherosclerosis, such as oxLDL, induce training in human monocytes, reflected in the increased production of pro-inflammatory cytokines and underlying epigenetic changes48. Similar monocyte phenotypes have been detected in individuals with coronary artery disease138 or dyslipidaemia139. Prevention of oxLDL-induced trained immunity can be achieved in vitro through mTOR inhibition with rapamycin. Similarly, nanobiologics containing the mTOR inhibitor (mTORi-NB) prevent oxLDL-induced pro-inflammatory cytokine production in human monocytes in vitro140 (Fig. 5d,e). Importantly, in atherosclerosis-prone Apoe–/– mice that were fed a Western diet for 12 weeks, a one-week mTORi-NB treatment regimen reduced plaque inflammation (Fig. 5f). Such highly effective, anti-inflammatory nanotherapeutics could also be applied in an acute cardiovascular event, such as myocardial infarction, or to treat high-risk patients with elevated biomarkers indicative of systemic inflammation141.
In addition to atherosclerosis, trained immunity plays a part in neurodegenerative diseases. For example, peripheral inflammatory stimuli can induce training or tolerance in brain-resident macrophages, also known as microglia, through epigenetic reprogramming142. Here, training increases β-amyloidosis and inflammation, whereas tolerized microglia have the opposite effect. Interestingly, tolerized microglia also reduce neuronal damage after stroke. Given that HSPCs in the bone marrow have a key role in the regulation of trained immunity, the blood–brain barrier does not pose any restrictions for this therapeutic approach. Gout, a form of inflammatory arthritis, is caused by the deposition of urate crystals in joints. These urate crystals as well as soluble urate can cause epigenetic and translational reprogramming of monocytes, resulting in increased IL-1β production50,143, indicating a contribution of trained immunity to this disease. The inhibition of mTOR signalling may be a promising approach to inhibit trained immunity, because mTOR activation is involved in both pathways50.
Autoimmune disorders
Many autoimmune and autoinflammatory diseases, such as rheumatoid arthritis, systemic lupus erythematosus, systemic sclerosis, sarcoidosis, diabetes mellitus type 1, and familial Mediterranean fever, display features of a trained immunity phenotype144. For example, changes in cellular metabolism and/or epigenetic rewiring underlie the increased cytokine production of innate immune cells in these diseases. Trained immunity could therefore have a crucial role in the initiation of these diseases, but also in the persistence or aggravation of symptoms. Nanotherapies could be developed for specific trained immunity pathways in these autoimmune diseases. For example, a nanotherapeutic treatment has been tested for experimental autoimmune encephalitis, a mouse model of multiple sclerosis145. Here, lipid nanoparticle formulations have been designed that contain modified autoantigen-encoding mRNA, which is taken up by CD11c+ cells in the spleen, resulting in antigen-specific tolerance. Although it is different to antigen-unspecific trained immunity regulation, nanoparticle–innate immune cell interaction holds great promise for the treatment of autoimmune diseases.
Organ transplantation
The ultimate goal in transplantation medicine is optimal graft function and the prevention of allograft rejection through the induction of immunological tolerance. The current standard of care is chronic immunosuppression, which is associated with major side effects, such as increased cancer incidence and susceptibility to infection. Allograft rejection is driven by the adaptive immune system. However, the onset of allograft rejection is triggered by innate immune cell activation146. Therefore, induction of an immune memory could be prevented by targeting myeloid cell inflammation. Moreover, allograft transplantation induces trained innate immunity through vimentin and HMGB1 signalling7, which can be inhibited by myeloid-cell-avid mTORi-NBs. Indeed, a brief mTORi-NB treatment regimen consisting of three intravenous injections significantly increased allograft survival without the need for chronic immunosuppression in a mouse heart transplantation model7,62 (Fig. 5g). Mechanistically, mTORi-NB treatment rebalances the immune system and prevents the induction of trained immunity, resulting in expansion of CD4+ regulatory T (Treg) cells at the expense of CD8+ cytotoxic T cells, subsequently delaying or completely preventing allograft rejection.
Hyperinflammatory episodes
The initiation and resolution of inflammation are complex mechanisms, which must be precisely calibrated to achieve the best possible clinical outcome147. For example, excessive inflammation after myocardial infarction can cause local tissue damage and worsen cardiac outcome148,149,150. Importantly, a hyperinflammatory episode can have major systemic consequences through the induction of trained immunity-like programs. Similar harmful cascades can also occur following infections. For example, an epidemic of cardiovascular events follows the normal influenza season, most probably caused by infection-induced rewiring of immune programs, which exacerbate ongoing cardiovascular inflammation, thereby increasing the likelihood of atherothrombotic events151. Individuals suffering from a hyperinflammatory episode, following cardiovascular events or infection, could benefit from anti-trained-immunity (nano)therapy that prevents immunological rewiring and circumvents detrimental downstream consequences. Although more research is needed to prove this hypothesis, an anti-inflammatory therapy with canakinumab, a therapeutic monoclonal antibody targeting IL-1β, has already been shown to reduce the recurrence rate of cardiovascular events in a clinical trial152.
Outlook
In the flood of twenty-first century immuno-oncology successes using checkpoint blockade therapies that activate T lymphocytes, innate immune regulation is increasingly being studied130,153. In this context, the fields of nanomedicine and immunotherapy are converging. Indeed, the full potential of nanomedicine may not be realised in drug delivery, but rather in immunotherapy1,154,155,156. We anticipate that nanomedicine will develop into a versatile immunotherapy modality, particularly for the regulation of inflammation and trained immunity. The latter is one of the fastest-growing fields within immunology3; however, the field is still very young157.
To unlock nanomedicine’s full potential for immunotherapeutic purposes, in particular, for trained immunity regulation, we need to learn from the (mistakes of the) drug delivery nanomedicine field and the success of the COVID-19 mRNA nanovaccines. Importantly, the relation of nanomaterial properties and in vivo behaviour needs to be better understood, including biodistribution, cellular specificity and toxicity158. Most studies investigating the physicochemical property–function relationships of nanomaterials are based on in vitro observations159,160,161, which are often not directly transferrable to the behaviour of the material in vivo. For example, shape has been proposed to be essential for nanoparticle uptake by cells; however, upon intravenous administration, nanoparticle shape features are substantially affected by the adsorption of proteins, that is, the protein corona162. In light of these discrepancies between in vitro and in vivo nanoparticle behaviour, we advocate a two-pronged approach that involves the systematic screening of large libraries of nanomaterials, concurrently in vitro and in mouse models in vivo (Fig. 6). Thus, from a single platform, libraries of differently composed, sized, shaped or charged nanoparticles could be established163. Nanoparticles in the library could be individually labelled, for example, by radiolabelling their therapeutic payloads or molecular building blocks, allowing quantitative detection by nuclear imaging techniques164. Similarly, fluorophores or stable isotopes could be integrated to study nanoparticle behaviour using optical techniques (NIRF imaging165, intravital microscopy166, immunofluorescence167 and flow cytometry6) and methods based on mass spectrometry, such as liquid chromatography–mass spectrometry or mass cytometry168,169 (Box 2). Additionally, non-invasive imaging could provide dynamic and longitudinal biodistribution information at the whole-organism level. Finally, multi-omics approaches, including chromatin immunoprecipitation followed by sequencing (ChIP-seq) and assay for transposase-accessible chromatin using sequencing (ATAC-seq) (epigenome), RNA-sequencing (transcriptome) and cytometry methods (immune landscape) should be applied to understand the interaction of nanomaterials with the immune system, from the molecular to the cellular level and beyond170. These studies will generate large data sets from which meaningful information can be extracted using non-biased computational modelling methods, including supervised and unsupervised machine learning171.
An additional level of refinement can be achieved by a concept called modularity of functionalization, that is, designing nanoparticle platforms that allow straightforward integration of therapeutic functionalities, without compromising the platform’s in vivo features. Modularity is an innate feature of RNA-based therapeutics172, but can also be implemented for other types of therapeutics, for example, smart pro-drug approaches for small-molecule drugs62. Regulatory bodies, such as the US Food and Drug Administration (FDA) and European Medicines Agency (EMA), should develop an approval process for nanomedicine platforms that can be modularly functionalized with diverse therapeutic payloads. Indeed, one reason that the COVID-19 mRNA vaccines were rapidly developed and deemed effective and safe is because the nanoparticle carrier system had previously been extensively evaluated, albeit carrying different nucleic acids173.
As new pathways and mechanisms are being unravelled, an increasingly defined picture of trained immunity is emerging3. The therapeutic regulation of trained immunity requires innovative therapeutics with the ability to change the functional programs of HSPCs (in the bone marrow and spleen). Nanomedicine has the potential to develop valuable trained-immunity-regulating methods, and the merging of nanomedicine, immunology, immunotherapy, in vivo imaging and artificial intelligence will yield nanoparticle-based immunotherapies that should revolutionize the treatment of immune-mediated diseases.
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Acknowledgements
This work was supported by National Institutes of Health (NIH) grants R01 HL144072, R01 CA220234, and P01 HL131478, as well as a Vici grant from the Dutch Research Council NWO and a European Research Council (ERC) Advanced Grant (no. 101019807) (all to W.J.M.M.). M.G.N. was supported by a Spinoza grant from the Netherlands Organization for Scientific Research and an ERC Advanced Grant (no. 833247).
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M.M.T.v.L., B.P. and W.J.M.M. wrote the manuscript. All authors researched data for the article, provided substantial contributions to discussion of content and reviewed and edited the manuscript before submission.
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van Leent, M.M.T., Priem, B., Schrijver, D.P. et al. Regulating trained immunity with nanomedicine. Nat Rev Mater 7, 465–481 (2022). https://doi.org/10.1038/s41578-021-00413-w
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DOI: https://doi.org/10.1038/s41578-021-00413-w
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