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Large scale bacterial gene discovery by similarity search

Nature Genetics volume 7, pages 205–214 (1994)Cite this article

Abstract

DNA sequencing efforts frequently uncover genes other than the targeted ones. We have used rapid database scanning methods to search for undescribed eubacterial and archean protein coding frames in regions flanking known genes. By searching all prokaryotic DNA sequences not marked as coding for proteins or stable RNAs against the protein databases, we have identified more than 450 new examples of bacterial proteins, as well as a smaller number of possible revisions to known proteins, at a surprisingly high rate of one new protein or revision for every 24 initial DNA sequences or 8,300 nucleotides examined. Seven proteins are members of families which have not been described in prokaryotic sequences. We also describe 49 re–interpretations of existing sequence data of particular biological significance.

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Author information

Authors and Affiliations

  1. Department of Cellular and Molecular Biology, Harvard University, 16 Divinity Avenue, Cambridge, Massachusetts, 02138, USA

    Keith Robison & Walter Gilbert

  2. Department of Genetics, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts, 02115, USA

    Keith Robison & George M. Church

  3. Howard Hughes Medical Institute, 200 Longwood Avenue, Boston, Massachusetts, 02115, USA

    George M. Church

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Robison, K., Gilbert, W. & Church, G. Large scale bacterial gene discovery by similarity search. Nat Genet 7, 205–214 (1994). https://doi.org/10.1038/ng0694-205

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