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Interaction of antibiotics with functional sites in 16S ribosomal RNA

Abstract

Chemical footprinting shows that several classes of antibiotics (streptomycin, tetracycline, spectinomycin, edeine, hygromycin and the neomycins) protect concise sets of highly conserved nucleotides in 16S ribosomal RNA when bound to ribosomes. These findings have strong implications for the mechanism of action of these antibiotics and for the assignment of functions to specific structural features of 16S rRNA.

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References

  1. Vazquez, D. Inhibitors of Protein Biosynthesis (Springer, Berlin, 1979).

    Book  Google Scholar 

  2. Cundliffe, E. in The Molecular Basis of Antibiotic Action (eds Gale, E. F., Cundliffe, E., Reynolds, P. E., Richmond, M. H. & Waring, M. H.) 402–547 (Wiley, New York, 1981).

    Google Scholar 

  3. Noller, H. F. A. Rev. Biochem. 53, 119–162 (1984).

    Article  CAS  Google Scholar 

  4. Moazed, D., Stern, S. & Noller, H. F. J. molec. Biol. 187, 399–416 (1986).

    Article  CAS  PubMed  Google Scholar 

  5. Stern, S., Moazed, D. & Noller, H. F. Meth. Enzym. (in the press).

  6. Moazed, D. & Noller, H. F. Cell 47, 985–994 (1986).

    Article  CAS  PubMed  Google Scholar 

  7. Gorini, L. in Ribosomes (eds Nomura, M., Tissieres, A. & Lengyel, P.) 791–803 (Cold Spring Harbor Laboratory, New York, 1974).

    Google Scholar 

  8. Davis, B. D. in Ribosomes (eds Nomura, M., Tissieres, A. & Lengyel, P.) 705–710 (Cold Spring Harbor Laboratory, New York, 1974).

    Google Scholar 

  9. Thompson, R. C., Dix, D. B., Gerson, R. B. & Karim, A. M. J. biol. Chem. 256, 6676–6681 (1981).

    CAS  PubMed  Google Scholar 

  10. Ruusala, T. & Kurland, C. G. Molec. gen. Genet. 198, 100–104 (1984).

    Article  CAS  PubMed  Google Scholar 

  11. Smailov, S. K. & Gavrilova, L. P. FEBS Lett. 192, 165–169 (1985).

    Article  CAS  PubMed  Google Scholar 

  12. Ozaki, M., Mizushima, S. & Nomura, M. Nature 222, 333–339 (1969).

    Article  ADS  CAS  PubMed  Google Scholar 

  13. Birge, E. A. & Kurland, C. G. Science 166, 1282–1284 (1969).

    Article  ADS  CAS  PubMed  Google Scholar 

  14. Biswas, D. K. & Gorini, L. J. molec. Biol. 64, 119–134 (1972).

    Article  CAS  PubMed  Google Scholar 

  15. Montandon, P., Nicolas, P., Schümann, P. & Stutz, E. Nucleic Acids Res. 13, 4299–4311 (1985).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Montandon, P. E., Wagner, R. & Stutz, E. EMBO J. 5, 3705–3708 (1986).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Woese, C. R., Gutell, R., Gupta, R. & Noller, H. F. Microbiol. Rev. 47, 621–669 (1983).

    CAS  PubMed  PubMed Central  Google Scholar 

  18. Prince, J. B., Taylor, B. H., Thurlow, D. L., Ofengand, J. & Zimmermann, R. A. Proc. natn. Acad. Sci. U.S.A. 79, 5450–5454 (1982).

    Article  ADS  CAS  Google Scholar 

  19. Stern, S., Wilson, R. C. & Noller, H. F. J. molec. Biol. 192, 101–110 (1986).

    Article  CAS  PubMed  Google Scholar 

  20. Anderson, D. I. & Kurland, C. G. Molec. gen. Genet. 191, 378–381 (1983).

    Article  Google Scholar 

  21. Thompson, R. C., Dix, D. B., Gerson, R. B. & Karim, A. M. J. biol. Chem. 256, 6676–6681.

  22. Suarez, G. & Nathans, D. Biochem. biophys. Res. Commun. 18, 743–750 (1965).

    Article  CAS  Google Scholar 

  23. Hierowski, M. Proc. natn. Acad. Sci. U.S.A. 53, 594–599 (1965).

    Article  ADS  CAS  Google Scholar 

  24. Suzuka, I., Kaji, H. & Kaji, A. Proc. natn. Acad. Sci. U.S.A. 55, 1483–1490 (1966).

    Article  ADS  CAS  Google Scholar 

  25. Gornicki, P., Ciesiolka, J. & Ofengand, J. Biochemistry 24, 4924–4930 (1985).

    Article  CAS  PubMed  Google Scholar 

  26. Ciesiolka, J., Gornicki, P. & Ofengand, J. Biochemistry 24, 4931–4938 (1985).

    Article  CAS  PubMed  Google Scholar 

  27. Nomura, M., Sidikaro, J., Jakes, K. & Zinder, N. in Ribosomes (eds Nomura, M., Tissieres, A. & Lengyel, P.) 804–814 (Cold Spring Harbor Laboratory, New York, 1974).

    Google Scholar 

  28. Burns, D. J. W. & Cundliffe, E. Eur. J. Biochem. 37, 570–574 (1973).

    Article  CAS  PubMed  Google Scholar 

  29. Wallace, B. J., Tai, P. C. & Davis, B. D. Proc. natn. Acad. Sci. U.S.A. 71, 1634–1638 (1974).

    Article  ADS  CAS  Google Scholar 

  30. Bollen, A., Davies, J., Ozaki, M. & Mizushima, S. Science 165, 85–86 (1969).

    Article  ADS  CAS  PubMed  Google Scholar 

  31. Sigmund, C., Ettayebi, M. & Morgan, E. A. Nucleic Acids Res. 12, 4653–4663 (1984).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Davies, J., Jones, D. S. & Khorana, H. J. molec. Biol. 18, 48–57 (1966).

    Article  CAS  PubMed  Google Scholar 

  33. Cabañas, M. J., Vazquez, D. & Modolell, J. Eur. J. Biochem. 87, 21–27 (1978).

    Article  PubMed  Google Scholar 

  34. Misumi, M., Nichimura, T., Komai, T. & Tanaka, N. Biochem. biophys. Res. Commun. 43, 196–199 (1978).

    Google Scholar 

  35. Zierhut, G., Piepersberg, W. & Böck, A. Eur. J. Biochem. 98, 577–583 (1979).

    Article  CAS  PubMed  Google Scholar 

  36. Spangler, E. A. & Blackburn, E. H. J. biol. Chem. 260, 6334–6340 (1985).

    CAS  PubMed  Google Scholar 

  37. Campuzano, S., Vazquez, D. & Modolell, J. Biochem. biophys. Res. Commun. 87, 960–966 (1979).

    Article  CAS  PubMed  Google Scholar 

  38. Li, M., Tzagloloff, A., Underbrink-Lyon, K. & Martin, N. C. J. biol. Chem. 257, 5921–5928 (1982).

    CAS  PubMed  Google Scholar 

  39. Lando, D., Cousin, M., Ojasso, T. & Raynaud, J. Eur. J. Biochem. 66, 597–606 (1976).

    Article  CAS  PubMed  Google Scholar 

  40. Szer, W. & Kurylo-Borowska, Z. Biochim. biophys. Acta 224, 477–486 (1970).

    Article  CAS  PubMed  Google Scholar 

  41. Peters, M. & Yarus, M. J. molec. Biol. 134, 471–491.

  42. Atmadja, J. et al. Nucleic Acids Res. 14, 659–673 (1986).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. Gutell, R. R., Weiser, B., Woese, C. R. & Noller, H. F. Prog. Nucleic. Acid Res. molec. Biol. 32, 155–216 (1985).

    Article  CAS  Google Scholar 

  44. Bowman, C. M., Dahlberg, J. E., Ikemura, T., Konisky, J. & Nomura, M. Proc. natn. Acad. Sci. U.S.A. 68, 964–968 (1971).

    Article  ADS  CAS  Google Scholar 

  45. Senior, B. W. & Holland, I. B. Proc. natn. Acad. Sci. U.S.A. 68, 959–963 (1971).

    Article  ADS  CAS  Google Scholar 

  46. Peattie, D. A., Proc. natn. Acad. Sci. U.S.A 76, 1760–1764 (1979).

    Article  ADS  CAS  Google Scholar 

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Moazed, D., Noller, H. Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature 327, 389–394 (1987). https://doi.org/10.1038/327389a0

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