Skip to main content
Log in

Dipolar filtered 1H-13C heteronuclear correlation spectroscopy for resonance assignment of proteins

  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Abstract

Resonance assignment is necessary for the comprehensive structure determination of insoluble proteins by solid-state NMR spectroscopy. While various 2D and 3D correlation techniques involving 13C and 15N spins have been developed for this purpose, 1H chemical shift has not been exploited sufficiently. We demonstrate the combination of the regular 1H-13C heteronuclear correlation (HETCOR) experiment and a dipolar filtered HETCOR technique to obtain better resolved 1H chemical shift spectra. The dipolar filtered experiment, MELODI-HETCOR, simplifies the 1H spectra by suppressing the directly bonded C-H correlation peaks and retaining only the medium- and long-range cross peaks. We apply this MELODI-HETCOR technique to several amino acids and proteins with various isotopic labeling patterns. The enhanced 1H chemical shift resolution allows the assignment of overlapping Hα and Hβ resonances in Ser, identifies the 1H chemical shift differences between neutral and cationic imidazole rings of His, and permits the assignment of residues with side chain nitrogen atoms in ubiquitin. The potential utility of this dipolar filtered HETCOR technique to resonance assignment of extensively labeled proteins is discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Caravatti, P., Braunschweiler, L. and Ernst, R.R. (1983) Chem. Phys. Lett., 100, 305-310.

    Google Scholar 

  • Geen, H., Gottwald, J., Graf, R., Schnell, I., Spiess, H.W. and Titman, J.J. (1997) J. Magn. Reson., 125, 224-227.

    Google Scholar 

  • Hong, M. (1999a) J. Magn. Reson., 139, 389-401.

    Google Scholar 

  • Hong, M. (1999b) J. Biomol. NMR, 15, 1-14.

    Google Scholar 

  • Hong, M. and Griffin, R.G. (1998) J. Am. Chem. Soc., 120, 7113-7114.

    Google Scholar 

  • Hong, M. and Jakes, K. (1999) J. Biomol. NMR, 14, 71-74.

    Google Scholar 

  • Huster, D., Xiao, L.S. and Hong, M. (2001) Biochemistry, accepted.

  • Ishii, Y. and Tycko, R. (2000) J. Am. Chem. Soc., 122, 1443-1455.

    Google Scholar 

  • Lee, C.W.B. and Griffin, R.G. (1989) Biophys. J., 55, 355-358.

    Google Scholar 

  • Lee, M. and Goldburg, W.I. (1965) Phys. Rev., 140, A1261-A1271.

    Google Scholar 

  • Lesage, A., Charmont, P., Steuernagel, S. and Emsley, L. (2000) J. Am. Chem. Soc., 122, 9739-9744.

    Google Scholar 

  • Lesage, A., Sakellariou, D., Steuernagel, S. and Emsley, L. (1998) J. Am. Chem. Soc., 120, 13194-13201.

    Google Scholar 

  • Marassi, F.M. and Opella, S.J. (2000) J. Magn. Reson., 144, 150-155.

    Google Scholar 

  • McDermott, A.E., Polenova, T., Bockmann, A., Zilm, K.W., Paulson, E.K., Martin, R.W. and Montelione, G.T. (2000) J. Biomol. NMR, 16, 209-219.

    Google Scholar 

  • Pauli, J., van Rossum, B., Forster, H., de Groot, H.J.M. and Oschkinat, H. (2000) J. Magn. Reson., 143, 411-416.

    Google Scholar 

  • Piantini, U., Sorensen, O.W. and Ernst, R.R. (1982) J. Am. Chem. Soc., 104, 6800-6801.

    Google Scholar 

  • Rance, M., Sorensen, O.W., Bodenhausen, G., Wagner, G., Ernst, R.R. and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun., 117, 479-485.

    Google Scholar 

  • Rienstra, C.M., Hatcher, M.E., Mueller, L.J., Sun, B.Q., Fesik, S.W. and Griffin, R.G. (1998) J. Am. Chem. Soc., 120, 10602-10612.

    Google Scholar 

  • Rienstra, C.M., Hohwy, M., Hong, M. and Griffin, R.G. (2000) J. Am. Chem. Soc., 122, 10979-10990.

    Google Scholar 

  • Straus, S.K., Bremi, T. and Ernst, R.R. (1998) J. Biomol. NMR, 12, 39-50.

    Google Scholar 

  • Tan, W.M., Gu, Z., Zeri, A.C. and Opella, S.J. (1999) J. Biomol. NMR, 13, 337-342.

    Google Scholar 

  • van Rossum, B.J., de Groot, C.P., Ladizhansky, V., Vega, S. and de Groot, H.J.M. (2000) J. Am. Chem. Soc., 122, 3465-3472.

    Google Scholar 

  • van Rossum, B.J., Forster, H. and de Groot, H.J.M. (1997) J. Magn. Reson., 124, 516-519.

    Google Scholar 

  • Vinogradov, E., Madhu, P.K. and Vega, S. (1999) Chem. Phys. Lett., 314, 443-450.

    Google Scholar 

  • Wang, A.C. and Bax, A. (1996) J. Am. Chem. Soc., 118, 2483-2494.

    Google Scholar 

  • Wang, A.C., Grzesiek, S., Tschudin, R., Lodi, P.J. and Bax, A. (1995) J. Biomol. NMR, 5, 376-382.

    Google Scholar 

  • Wang, J., Denny, J., Tian, C., Kim, S., Mo, Y., Kovacs, F., Song, Z., Nishimura, K., Gan, Z., Fu, R., Quine, J.R. and Cross, T.A. (2000) J. Magn. Reson., 144, 162-167.

    Google Scholar 

  • Wiener, M., Freymann, D., Ghosh, P. and Stroud, R.M. (1997) Nature, 385, 461-464.

    Google Scholar 

  • Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley, New York, NY.

    Google Scholar 

  • Yao, X.L., Schmidt-Rohr, K. and Hong, M. (2001) J. Magn. Reson., 149, 139-143.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yao, X., Hong, M. Dipolar filtered 1H-13C heteronuclear correlation spectroscopy for resonance assignment of proteins. J Biomol NMR 20, 263–274 (2001). https://doi.org/10.1023/A:1011251924874

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1011251924874

Navigation