Abstract
The protein data bank (PDB), at Brookhaven National Laboratory, is a database containing information on experimentally determined three-dimensional structures of proteins, nucleic acids, and other biological macromolecules, with approximately 9000 entries. The PDB has a 27-year history of service to a global community of researchers, educators, and students in a wide variety of scientific disciplines. Data are easily submitted via PDB's WWW-based tool AutoDep, in either PDB or mmCIF format, and are most conveniently examined via PDB's WWW-based tool 3DB Browser. Collaborative centers have been, and continue to be, established worldwide to assist in data deposition, archiving, and distribution.
Similar content being viewed by others
References
Abola E.E., Bernstein F.C., Bryant S.H., Koetzle T.F. and Weng J.: Protein Data Bank. In: (Allen F.H., Bergerhoff G. and Sievers R. (eds), Crystallographic Databases — Information Content, Software Systems, Scientific Applications. Data Commission of the International Union of Crystallography, Bonn, 1987, pp. 107–132.
Abola E.E., Sussman J.L., Prilusky J. and Manning N.O.: Protein data bank archives of three-dimensional macromolecular structures, Meth. Enzym. 277 (1997): 556–571.
Sussman J.L., Lin D., Jiang J., Manning N.O., Prilusky J., Ritter O. and Abola E.E.: Protein data bank (PDB): Database of 3D structural information of biological macromolecules, Acta Cryst. D54 (1998): 1078–1084.
Abola E.E.: PDB-SHELL. PDB Available anonymous FTP (1994): ftp.pdb.bnl.gov.
Peitsch M.C., Stampf D.R., Wells T.N.C. and Sussman J.L.: The Swiss 3D-image collection and Brookhaven protein data bank browser on the World-Wide Web, TIBS 20 (1995): 82–84.
Stampf D.R., Felder C.E. and Sussman J.L.: PDBBrowse — a graphics interface to the Brookhaven protein data bank. Nature 374 (1995): 572–574.
Sussman J.L.: Bridging the Gap. Nature Struct. Biol. 4 (1997): 517.
Phillips D.C.: Protein Crystallography 1971: Coming of Age. In: Cold Spring Harbor Symposium of Quantitative Biology, (eds) Cold Spring Harbor Laboratory, Cold Spring Harbor, (1971), pp. 589–592.
Kwong P.D., Wyatt R., Robinson J., Sweet R.W., Sodroski J. and Hendrickson W.A.: Structure of an HIV gp120 Envelope Glycoprotein in Complex with the CD4 Receptor and a Neutralizing Human Antibody, Nature 393 (1998): 648–659.
Rizzuto C.D., Wyatt R., Hernandez-Ramos N., Sun Y., Kwong P.D., Hendrickson W.A. and Sodroski J.: A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding. Science 280 (1998): 1949–1953.
Sayle R.A. and Milner-White E.J.: RASMOL: Biomolecular graphics for all, TIBS 20 (1995): 374–376.
Bairoch A. and Boeckmann B.: The SWISS-PROT Protein sequence data bank: current status, Nucl. Acids Res. 22 (1994): 3578–3580.
Seavey B.R., Farr E.A., Westler W.M. and Markley J.L.: A relational database for sequence-specific protein NMR data, J. Biomol. NMR 1 (1991): 217–236.
Bairoch A.: The ENZYME Data Bank, Nucl. Acids Res. 22 (1994): 3626–3627.
Sussman J.L.: Protein data bank deposits, Science 282 (1998): 1991.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Sussman, J., Abola, E., Lin, D. et al. The protein data bank. Genetica 106, 149–158 (1999). https://doi.org/10.1023/A:1003753517358
Issue Date:
DOI: https://doi.org/10.1023/A:1003753517358