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The Mechanism of the Supercoiled DNA Recognition by the Eukaryotic Type I Topoisomerases: I. The Enzyme Interaction with Nonspecific Oligonucleotides

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Abstract

Interaction of the DNA type I topoisomerases from the murine and human placenta cells with nonspecific oligonucleotides was analyzed. The contributions of strong and week nonspecific electrostatic, van der Waals's, and hydrophobic interactions, and hydrogen bonding of the enzymes to the complex formation with the single- and double-stranded DNAs were determined. The factors that determine the top-priority recognition of the topologically stressed DNA were revealed. The results were interpreted in comparison with the X-ray analysis data for human DNA topoisomerase I.

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Authors and Affiliations

  1. Novosibirsk Institute of Bioorganic Chemistry, Siberian Division, Russian Academy of Sciences, pr. Akademika Lavrent'eva 8, Novosibirsk, 630090, Russia

    D. V. Bugreev, V. N. Buneva & G. A. Nevinsky

  2. Institute of Cytology and Genetics, Siberian Division, Russian Academy of Sciences, pr. Akademika Lavrent'eva 10, Novosibirsk, 630090, Russia

    O. I. Sinitsyna

Authors
  1. D. V. Bugreev
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  2. V. N. Buneva
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  3. O. I. Sinitsyna
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  4. G. A. Nevinsky
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Bugreev, D.V., Buneva, V.N., Sinitsyna, O.I. et al. The Mechanism of the Supercoiled DNA Recognition by the Eukaryotic Type I Topoisomerases: I. The Enzyme Interaction with Nonspecific Oligonucleotides. Russian Journal of Bioorganic Chemistry 29, 143–153 (2003). https://doi.org/10.1023/A:1023208431839

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