Skip to main content
Log in

Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

ISSR-PCR was carried out on 12 accessions of the grapevine (Vitis vinifera L.) variety 'Garnacha' and one accession of a related variety. The analysis had two objectives: to determine if ISSR-PCR could detect polymorphisms within a variety unable to be revealed previously with RAPDs, and to quantify the intralaboratory reproducibility of the assay. Two electrophoretic systems and staining procedures were assessed. No intravarietal differences could be detected. However, the ISSR approach revealed highly reproducible polymorphisms among the two varieties tested. The reproducibility of the banding patterns ranged from 86 to 94 per cent, being maximum when polyacrylamide gel electrophoresis and silver staining procedures were followed and weak bands discarded.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Bachmann, K., 1994. Molecular markers in plant ecology. New Phytol 126: 403-418.

    Article  CAS  Google Scholar 

  • Bassam, B. J., G. Caetano-Annol és & P. M. Gresshoff, 1991. Fast and sensitive silver staining of DNAin polyacrylamide gels. Anal Biochem 80: 81-84.

    Google Scholar 

  • Becker, J. & M. Heun, 1995. Mapping of digested and undigested random amplified microsatellite polymorphisms in barley. Genome 38: 991-998.

    PubMed  CAS  Google Scholar 

  • Bourquin, J. C., A. Sonko, L. Otten & B. Walter, 1993. Restriction fragment length polymorphism and molecular taxonomy in Vitis viniferaL. Theor Appl Genet 87: 431-438.

    CAS  Google Scholar 

  • Bourquin, J. C., P. Tournier, L. Otten & B. Walter, 1992. Identification of sixteen grapevine rootstocks by RFLP and RFLP analysis of nuclear DNA extracted from the wood. Vitis 31: 157-162.

    CAS  Google Scholar 

  • Bowditch, B. M., D. G. Albright, J. G. K. Williams & M. J. Braun, 1993. Use of randomly amplified polymorphic DNA markers in comparative genome studies. Methods Enzymol 224: 294-309.

    PubMed  CAS  Google Scholar 

  • Bowers, J. E., E. B. Bandman & C. P. Meredith, 1993. DNAfingerprint characterization of some wine grape cultivars. Am J Enol Viticult 44: 266-274.

    CAS  Google Scholar 

  • Bowers, J. E., G. S. Dangi, R. Vignani & C. P. Meredith, 1996. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis viniferaL.). Genome 39: 628-633.

    CAS  PubMed  Google Scholar 

  • Caetano-Anoll és, G., B. J. Bassam & P. M. Gresshoff, 1992. Primertemplate interactions during DNA amplifications fingerprinting with single arbitrary oligonucleotides. Mol Gen Genet 235: 157- 165.

    Article  Google Scholar 

  • Caló, A., A. Costacurta, S. Cancellier & R. Forti, 1990. Garnacha, Grenache, Cannonao, Tocai rosso, un unico vitigno. Vignevini 9: 45-48.

    Google Scholar 

  • Collins, G. G. & R. H. Symons, 1993. Polymorphisms in grapevine DNA detected by the RAPD PCR technique. Plant Mol Biol Rep 11: 105-112.

    CAS  Google Scholar 

  • Gogorcena, Y., S. Arulsekar, A. M. Dandekar & D. E. Parfitt, 1993. Molecular markers for grape characterization. Vitis 32: 183-185.

    CAS  Google Scholar 

  • Kantety, R. V., X. Zeng, J. L. Bennetzen & B. E. Zehr, 1995. Assessment of genetic diversity in dent and popcorn (Zea maysL.) inbred lines using intersimple sequence repeat (ISSR) amplification. Mol Breeding 1: 365-373.

    Article  CAS  Google Scholar 

  • Litt, M. & J. A. Luty, 1989. A hypervariable microsatellite revealed by in vitroamplification of a dinucleotide repeatwithin the cardiac muscle actin gene. Am J Human Genet 44: 397-401.

    CAS  Google Scholar 

  • Mulcahy, D. L., M. Cresti, S. Sansavini, G. C. Douglas, H. F. Linskens, G. Bergamini Mulcahy, R. Vignani & M. Pancaldi, 1993. The use of random amplified polymorphic DNAs to fingerprint apple genotypes. Sci Hort Amsterdam 54: 89-96.

    Article  CAS  Google Scholar 

  • Reynier, A., 1991. Manuel de Viticulture. Lavoisier, Paris.

    Google Scholar 

  • Royo, B., J. González, M. J. Laquidain & M. P. Larumbe, 1989. Caracterización mediante análisis isoenzimático de la vinífera' Garnacha' (Vitis viniferaL.). Investigación Agraria: Producción y Protección Vegetal 4: 343-354.

    Google Scholar 

  • Salimath, S. S., A. C. D. Oliveira, I. D. Godwin & J. L. Bennetzen, 1995. Assessment of genome origins and genetic diversity in the genus Eleusinewith DNA markers. Genome 38: 757-763.

    PubMed  CAS  Google Scholar 

  • Sensi, E., R. Vignani, W. Rohde & S. Biricolti, 1996. Characterization of genetic biodiversity with Vitis viniferaL. Sangiovese and Colorino genotypes byAFLP and ISTRDNAmarker technology. Vitis 35: 183-188.

    Google Scholar 

  • Shah, F. H., O. Rashid, A. J. Simons & A. Dunsdon, 1994. The utility of RAPD markers for the determination of genetic variation in oil palm (Elaeis guineensis). Theor Appl Genet 89: 713-718.

    Article  CAS  Google Scholar 

  • Skroch, P. W. & J. Nienhuis, 1995. Qualitative and quantitative characterization of RAPD variation among snap bean (Phaseolus vulgaris) genotypes. Theor Appl Genet 91: 1078-1085.

    CAS  Google Scholar 

  • Stavrakakis, M. & M. Loukas, 1983. The between-and within-grape-cultivars genetic variation. Sci Hort Amsterdam 19: 321-334.

    Article  CAS  Google Scholar 

  • Thomas, M. R., S. Matsumoto, P. Cain & N. S. Scott, 1993. Repetitive DNA of grapevine: classes present and sequences suitable for cultivar identification. Theor Appl Genet 86: 173-180.

    CAS  Google Scholar 

  • Thomas, M. R. & N. S. Scott, 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86: 985-990.

    CAS  Google Scholar 

  • Torres, A. M., N. F. Weeden & A. Martín, 1993. Linkage among isozyme, RFLP and RAPD markers in Vicia faba. Theor Appl Genet 85: 937-945.

    Article  CAS  Google Scholar 

  • Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeau, 1995.

  • AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407-4414.

  • Wang, Z., J. L. Weber, G. Zhong & S. D. Tanksley, 1994. Survey of plant short tandem DNA repeats. Theor Appl Genet 88: 1-6.

    CAS  Google Scholar 

  • Ward, E., 1995. Improved polymerase chain reaction (PCR) detection of Gaeumannomyces graminisincluding a safeguard against false negatives. Eur J Plant Pathol 101: 561-566.

    Article  CAS  Google Scholar 

  • Weber, J. L. & P. E. May, 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Human Genet 44: 388-396.

    CAS  Google Scholar 

  • Williams, J. G. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski & S. V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531- 6535.

    PubMed  CAS  Google Scholar 

  • Williams, J. J. K., M. K. Hanafey, J. A. Rafalski & S. V. Tingey, 1993. Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol 218: 704-740.

    Article  PubMed  CAS  Google Scholar 

  • Wolff, K.& J. PetersVanRijn, 1993. Rapid detection of genetic variability in chrysanthemum (Dendranthema grandifloraTzvelev) using random primers. Heredity 71: 335-341.

    PubMed  CAS  Google Scholar 

  • Wolff, K., E. Zietkiewicz & H. Hofstra, 1995. Identification of Chrysanthemum cultivars and stability of DNA fingerprint patterns. Theor Appl Genet 91: 439-447.

    Article  CAS  Google Scholar 

  • Wu, K., R. Jones, L. Danneberger & P. A. Scolnik, 1994. Detection of microsatellite polymorphisms without cloning. Nucl Acids Res 22: 3257-3258.

    PubMed  CAS  Google Scholar 

  • Xu, H., D. J. Wilson, S. Arulsekar & A. T. Bakalinsky, 1995. Sequence-specific polymerase chainreaction markers derived from randomly amplified polymorphic DNA markers for fingerprinting grape (Vitis) rootstocks. J Am Soc Hort Sci 120: 714-720.

    CAS  Google Scholar 

  • Zietkiewicz, E., A. Rafalski & D. Labuda, 1994. Genome fingerprinting by simple sequence repeat (SSR)anchored polymerase chain reaction amplification. Genomics 20: 176-183.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Moreno, S., Martín, J.P. & Ortiz, J.M. Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm. Euphytica 101, 117–125 (1998). https://doi.org/10.1023/A:1018379805873

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1018379805873

Navigation