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Engineering in vivo instability of firefly luciferase and Escherichia coli β-glucuronidase in higher plants using recognition elements from the ubiquitin pathway

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Abstract

The ubiquitin pathway targets proteins for degradation through the post-translational covalent attachment of the 76 amino acid protein ubiquitin to ∈-amino lysyl groups on substrate proteins. Two instability determinants recognized by the ubiquitin pathway in Saccharomyces cerevisiae have been identified. One is described by the N-end rule and requires specific destabilizing residues at the substrate protein N-termini along with a proximal lysyl residue for ubiquitin conjugation. The second is a linear uncleavable N-terminal ubiquitin moiety. The ability of these two determinants to function in higher plants was investigated in tobacco protoplast transient transfection assays using DNA encoding variants of well characterized reporter enzymes as substrates: firefly luciferase that is localized to peroxisomes (pxLUC), a cytosolic version of LUC (cLUC), and Escherichia coli β-glucuronidase (GUS). cLUC with phenylalanine encoded at its mature N-terminus was 10-fold less abundant than cLUC with methionine at its mature N-terminus. GUS with phenylalanine encoded at its mature N-terminus was 3-fold less abundant than GUS with methionine at its mature N-terminus. The presence of a uncleavable N-terminal ubiquitin fusion resulted in 50-fold lower protein accumulation of cLUC, but had no effect on GUS. Both instability determinants had a much larger effect on cLUC than on pxLUC, suggesting that these degradation signals are either unrecognized or poorly recognized in the peroxisomes.

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References

  1. Atmann T, Damm B, Helfter U, Willmitzer L, Morris PC: Protoplast transformation and methods to create specific mutants in Arabidopsis thaliana. In: Koncz C, Chua NH, Schell J (ed) Methods in Arabidopsis research, pp. 310–330. World Scientific, Singapore (1992).

    Google Scholar 

  2. Bachmair A, Becker F, Schell J: Use of a reporter transgene to generate Arabidopsis mutants in ubiquit-independent protein degradation. Proc Natl Acad Sci USA 90: 418–421 (1993).

    Google Scholar 

  3. Bachmair A, Finley D, Varskavsky A: In vivo half-life of a protein is a function of its amino-terminal residue. Science 234: 179–186 (1986).

    Google Scholar 

  4. Bachmair A, Varskavsky A: The degradation signal in a shortlived protein. Cell 56: 1019–1032 (1989).

    Google Scholar 

  5. Baker RT, Varshavksy A: Yeast N-terminal amidase: a new enzyme and component of the N-end rule pathway. J Biol Chem 270: 12065–12074 (1995).

    Google Scholar 

  6. Baker RT, Varshavsky A: Inhibition of the Nend rule pathway in living cells. Proc Natl Acad Sci USA 88: 1090–1094 (1991).

    Google Scholar 

  7. Balzi E, Choder M, Chen W, Varshavsky A, Goffeau A: Cloning and functional analysis of the arginylt-RNA-protein transferase gene ATE1 of Saccharomyces cerevisiae. J Biol Chem 265: 7464–7471 (1990).

    Google Scholar 

  8. Bartel B, Wunning I, Varskavsky A: The recognition component of the N-end rule pathway. EMBO J 9: 3179–3189 (1990).

    Google Scholar 

  9. Beers E, Moreno T, Callis J: Subcellular localization of ubiquitin and ubiquitinated proteins in Arabidopsis thaliana. J Biol Chem 267: 15432–15439 (1992).

    Google Scholar 

  10. Berlin CM, Schimke RT: Influence of turnover rates on the responses of enzyme to cortisone. Mol Pharm 1: 149–156 (1965).

    Google Scholar 

  11. Bevan M, Barnes WM, Chilton MD: Structure and transcription of the nopaline synthase gene region of TDNA. Nucl Acids Res 11: 369–385 (1983).

    Google Scholar 

  12. Bollage DM, Edelstein SJ: Protein concentration determination. In: Protein Methods, pp. 45–69. Academic Press, New York (1991).

    Google Scholar 

  13. Burke T, Callis J, Vierstra RD: Characterization of a polyubiquitin gene from Arabidopsis thaliana. Mol Gen Genet 213: 435–443 (1988).

    Google Scholar 

  14. Callis J: Regulation of protein degradation in plants. In: Setlow J. (ed) Genetic Engineering: Principles and Methods, pp. 121–148. Plenum Press, New York (1997).

    Google Scholar 

  15. Chau V, Tobias J, Bachmair A, Marriott D, Ecker D, Gonda D, Varshavsky A: A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein. Science 243: 1576–1583 (1989).

    Google Scholar 

  16. Ciechanover A, Finley D, Varshavsky A: Ubiquitin dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85. Cell 37: 57–66 (1984).

    Google Scholar 

  17. Conti E, Franks NP, Brick P: Crystal structure of firefly luciferase throws light on a superfamily of adenylate-forming enzymes. Structure 4: 287–298 (1996).

    Google Scholar 

  18. DeWet JR, Wood KV, DeLuca M, Helinski DR, Subramani S: Firefly luciferase gene: structure and expression inmammalian cells. Mol Cell Biol 2: 1044–1051 (1987).

    Google Scholar 

  19. Ecker DG, Butt TR, Marsh HJ, Sternberg EJ, Margolis N, Monia BP, Jonnalagadda S, Khan MI, Weber PL, Muellar L, Crooke ST: Gene synthesis, expression structures, and functional activities of sitespecific mutants of ubiquitin. J Biol Chem 262: 14213–14221 (1987).

    Google Scholar 

  20. Ferber, Ciechanover A: role of arginine-tRNA in protein degradation by the ubiquitin pathway. Nature 326: 808–811 (1987).

    Google Scholar 

  21. Finley D, Ozkaynak E, Varshavsky A: The yeast polyubiquitin gene is essential for resistance to high temperatures, starvation and other stresses. Cell 48: 1035–1046 (1987).

    Google Scholar 

  22. Gallaher S, Winston SE, Fuller SA, Hurrell JGR: Immunoblotting and immunodetection. In: Ausubel FM, Brent R, Kingston RE (ed) Current Protocols in Molecular Biology, pp. 10.8.1–17. Greene Publishing Associates/WileyInterscience, New York (1994).

    Google Scholar 

  23. Gonda D, Bachmair A, Wunning I, Tobias J, Lane W, Varshavsky A: Universality and structure of the N-end rule. J Biol Chem 264: 16700–16712 (1989).

    Google Scholar 

  24. Gould SJ, Keller GA, Schneider M, Howell SH, Garrard LJ, Goodman JM, Distel B, Tabak H, Subramani S: Peroxisomal protein import is conserved between yeast, plants, insects, and mammals. EMBO J 9: 85–90 (1990).

    Google Scholar 

  25. Heller H, Hershko A: A ubiquitin-protein ligase specific for type III protein substrates. J Biol Chem 265: 6532–6535 (1990).

    Google Scholar 

  26. Hershko A, Heller J, Eytan E, Reiss Y: The protein substrate binding site of the ubiquitin-protein ligase system. J Biol Chem 261: 11992–11999 (1986).

    Google Scholar 

  27. Hochstrasser M: Ubiquitin-dependent protein degradation. Annu Rev Genet 30: 405–439 (1996).

    Google Scholar 

  28. Holloway SL, Glotzer M, King RW, Murray AW: Anaphase is initiated by proteolysis rather than by the inactivation of maturation-promoting factor. Cell 73: 1393–1402 (1993).

    Google Scholar 

  29. Ito H, Yasuki Y, Murata K, Kimura A: Transformation of intact yeast cells treated with alkali cations. J Bact 153: 163–168 (1983).

    Google Scholar 

  30. Jefferson R: Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5: 387–405 (1987).

    Google Scholar 

  31. Jefferson R, Kavanagh T, Bevan M: GUS fusions: βglucuronidase as a sensitive and versatile genemarker in higher plants. EMBO J 6: 3901–3907 (1987).

    Google Scholar 

  32. Johnson ES, Bartel B, Seufert W, Varshavsky A: Ubiquitin as a degradation signal. EMBO J 11: 497–505 (1992).

    Google Scholar 

  33. Keller GA, Gould S, DeLuca M, Subramani S: Firefly luciferase is targeted to peroxisomes in mammalian cells. Proc Natl Acad Sci USA 84: 3264–3268 (1987).

    Google Scholar 

  34. Kunkel TA: Rapid and efficient sitedirected mutagenesis without phenotypic selection. Proc Natl Acad Sci USA 82: 488–492 (1985).

    Google Scholar 

  35. Madura K, Varshavsky A: Degradation of G alpha by the N-end rule pathway. Science 265: 1454–1458 (1994).

    Google Scholar 

  36. Millar A, Straume M, Chory J, Chua NH, Kay SA: The regulation of circadian period by phototransduction pathways in Arabidopsis. Science 267: 1163–1166 (1995).

    Google Scholar 

  37. Norris S, Meyer S, Callis J: The intron of Arabidopsis polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression. Plant Mol Biol 21: 895–906 (1993).

    Google Scholar 

  38. Pickart CM, Rose I: Ubiquitin carboxyl-terminal hydrolase acts on ubiquitin carboxyl-terminal amides. J Biol Chem 261: 7903–7910 (1985).

    Google Scholar 

  39. Reiss Y, Kaim D, Hershko A: Specificity of binding of N-terminal residue of proteins to ubiquitinprotein ligase. Use of amino acid derivative to characterize specific binding sites. J Biol Chem 263: 2693–2698 (1988).

    Google Scholar 

  40. Restrepo MA, Freed DD, Carrington JC: Nuclear transport of plant polyviral proteins. Plant Cell 2: 987–998 (1990).

    Google Scholar 

  41. Reynolds SJ, Smith SM: Regulation of expression of the cucumber isocitrate lyase gene in cotyledons upon seed germination and by sucrose. Plant Mol Biol 29: 885–896 (1995).

    Google Scholar 

  42. Richter-Ruoff B, Wolf DH, Hochstrasser M: Degradation of the yeast MATβ2 transcriptional regulator is mediated by the proteasome. FEBS Lett 354: 50–52 (1994).

    Google Scholar 

  43. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989).

    Google Scholar 

  44. Tobias J, Varshavsky A: Cloning and functional analysis of the ubiquitinspecific protease gene UBP1 of Saccharomyces cerevisiae. J Biol Chem 266: 12021–12028 (1991).

    Google Scholar 

  45. Tobias JW, Shrader TE, Rocap G, Varshavsky A: The N-end rule in bacteria. Science 254: 1374–1377 (1991).

    Google Scholar 

  46. Varshavsky A: The N-end rule: functions, mysteries, uses. Proc Natl Acad Sci USA 93: 12142–12149 (1996).

    Google Scholar 

  47. Varshavsky A: The N-end role pathway of protein degradation. Genes Cells 2: 13–28 (1997).

    Google Scholar 

  48. Vierstra RD: Proteolysis in plants: mechanisms and functions. Plant Mol Biol 275–302 (1996).

  49. Wiebel FF, Kunau WH: The Pas2 protein essential for peroxisome biogenesis is related to ubiquitin-conjugating enzymes. Nature 359: 73–76 (1992).

    Google Scholar 

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Worley, C.K., Ling, R. & Callis, J. Engineering in vivo instability of firefly luciferase and Escherichia coli β-glucuronidase in higher plants using recognition elements from the ubiquitin pathway. Plant Mol Biol 37, 337–347 (1998). https://doi.org/10.1023/A:1006089924093

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