Triosephosphate isomerase as a therapeutic target against trichomoniasis

https://doi.org/10.1016/j.molbiopara.2021.111413Get rights and content

Highlights

  • We screened a library of ∼500,000 compounds in silico, to identify selective compounds against TvTIM.

  • We identified the compound: (3,3′-{[4-(4-morpholinyl)phenyl]methylene}bis(4-hydroxy-2H-chromen-2-one) (A4) as potential drug.

  • We determined an IC50 of 47 μM of the A4 compound, with favorable toxicity results (in theoretical and experimental assays).

  • This finding represents a promising alternative to fight trichomoniasis.

Abstract

Trichomoniasis is the most common non-viral sexually transmitted infection, caused by the protozoan parasite Trichomonas vaginalis, affecting millions of people worldwide. The main treatment against trichomoniasis is metronidazole and other nitroimidazole derivatives, but up to twenty percent of clinical cases of trichomoniasis are resistant to these drugs. In this study, we used high-performance virtual screening to search for molecules that specifically bind to the protein, triosephosphate isomerase from T. vaginalis (TvTIM). By in silico molecular docking analysis, we selected six compounds from a chemical library of almost 500,000 compounds. While none of the six inhibited the enzymatic activity of recombinant triosephosphate isomerase isoforms, one compound (A4; 3,3′-{[4-(4-morpholinyl)phenyl]methylene}bis(4- hydroxy-2H-chromen-2-one) altered their fluorescence emission spectra, suggesting that this chemical might interfere in an important non-glycolytic function of TvTIM. In vitro assays demonstrate that A4 is not cytotoxic but does have trichomonacidal impact on T. vaginalis cultures.

With these results, we propose this compound as a potential drug with a new therapeutic target against Trichomonas vaginalis.

Introduction

The extracellular protozoan parasite Trichomonas vaginalis is the causative agent of trichomoniasis, the most common non-viral sexually transmitted disease (STD) [[1], [2], [3], [4], [5]]. There are approximately 270 million cases of trichomoniasis annually worldwide (WHO 2020). Imidazole derivatives, such as metronidazole and tinidazole, are the most common treatment, but this family of drugs was developed more than 60 years ago, and multiple resistance mechanisms have developed. Currently, up to 20 % of trichomoniasis cases are resistant to imidazole derivatives. Therefore, it is necessary to develop new drugs with different mechanisms of action [[4], [5], [6], [7], [8], [9]].

Trichomonas vaginalis has a highly repetitive genome, including many metabolic enzymes, such as the glycolytic enzyme triosephosphate isomerase (TvTIM), encoded by two functional genes; TvTIM1 and TvTIM2 [10]. The amino acid sequences of the two TvTIMs demonstrate a 98.4 % identity, and both isoforms share common structural and catalytic characteristics. Furthermore, their crystal structures are almost identical homodimers [11,12]. An additional function of TvTIM has been proposed due to gene duplication: the TvTIM protein on the surface of Trichomonas vaginalis interacts with extracellular matrix and basement membrane proteins such as laminin and fibronectin, which may have a role as virulence factors. TvTIM has also been identified in vesicles secreted by this parasite [13].

The dual location and function of TvTIM isoforms (in the glycolytic pathway and on the membrane surface) implies this multifunctional protein is an excellent new target for drug development against Trichomonas vaginalis [[13], [14], [15], [16]]. Previously, we identified a selective compound against TvTIM, which only inhibited the TvTIM2 recombinant protein without affecting in vitro T. vaginalis cultures [15]. In this study, we used a different high-throughput virtual screening methodology to select chemical compounds capable of binding to TvTIM. Our goal was to evaluate the effects of these selected compounds on the glycolytic activity in interactions that may alter the structure of TvTIM, thereby altering some functions of this protein in T. vaginalis cultures in vitro and demonstrating a probable trichomonacidal effect. These results will assist in the rational development of drugs against Trichomonas vaginalis that act via a different mechanism than the standard drugs.

Section snippets

Preparation of receptor protein and definition of binding sites

The X-ray crystallographic structures of TvTIM1, TvTIM2, and HsTIM (TIM from Homo sapiens) were obtained from the Protein Data Bank (PDB) [17] under PDB codes 3QSR, 3QST, and 4POC, respectively. The structures were used as protein targets for docking procedures at two potential previously reported sites [15]. Site I includes amino acids Lys11, Asn13, His94, Ser95, Glu96, Asp99, Glu166, Pro167, Ile168, Ala170, Ile171, Lys175–Thr179, Tyr209–Lys214, Asn216, and Asn217, and site II includes amino

Selection of potential inhibitors of TvTIM1 and TvTIM2 by molecular docking

We used the structure of TvTIM1 (PDB: 3QSR) to perform docking as there was no difference in the amino acids between the two potential sites TvTIM1 and TvTIM2. We performed docking using the ChemBridge database and calculated the values of binding affinity energies [26]. The selection criteria of the six best compounds were based on the calculated average of ΔGbinding of each compound. We used the interaction values of 20–30 conformers and determined that compounds with an average free energy

Discussion

The protozoan parasite Trichomonas vaginalis, which causes trichomoniasis, is one of the most common human parasitic infections and the most prevalent non-viral sexually transmitted infection [46]. The secondary reactions associated with current drugs and the increasing number of drug-resistant cases indicate that new strategies are needed for rational drug design against this disease [8,47,48].

Trichomonas vaginalis uses unique infection establishment practices, including adapting to

Conclusions

We propose that the A4 compound (3,3′-{[4-(4-morpholinyl)phenyl]methylene}bis(4-hydroxy-2H-chromen-2-one) should be developed as a new drug against trichomoniasis, one that could interact specifically in TvTIM, modifying this protein’s conformation, and exert a trichomonacidal effect on Trichomonas vaginalis cultures. This finding indicates that A4 may be a promising alternative, with different action mechanisms than conventional trichomoniasis treatments. The A4 compound had an IC50 of 47 μM

Ethical approval

The handling of animals in accordance with the accommodation and feeding procedures established by the bioethics committee of the ENMH-IPN and complying with the standard for the management and use of laboratory animals NOM-062 (Official Mexican Standard NOM-062-ZOO-1999, Technical specifications for the production, care and use of laboratory animals).

Author contributions

Claudia G. Benítez-Cardoza: Investigation Data Curation, Funding, Resources, Writing - Review & Editing.

Luis G. Brieba: Investigation, Methodology, Data Curation.

Rossana Arroyo: Investigation, Resources, Methodology, Data Curation.

Arturo Rojo-Domínguez: Investigation Data Curation, Funding, Resources, Writing - Review & Editing.

José Luis Vique-Sánchez: Conceptualization, Methodology, Supervision, Data Curation, Writing - Review & Editing.

Declaration of Competing Interest

The authors declare no conflicts of interest.

Acknowledgments

The authors are very grateful for the financial support from SIP-IPN México (20200919), COFAA-IPN, EDI-IPN, FINNOVA-CONACyT and SNI-CONACyT. Our thanks also go to CONACyT-México for the fellowship granted to JLVS, he studied in the program of Doctorado en Ciencias en Biotecnología at Instituto Politécnico Nacional.

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