Elsevier

Drug Discovery Today

Volume 25, Issue 11, November 2020, Pages 1988-1997
Drug Discovery Today

Review
Gene-to-screen
The E2 ubiquitin-conjugating enzyme UbcH5c: an emerging target in cancer and immune disorders

https://doi.org/10.1016/j.drudis.2020.09.015Get rights and content

Highlights

  • UbcH5c is an important ubiquitin-conjugating enzyme in the UbcH5 family.

  • UbcH5c is aberrantly expressed in human cancer and immune disorders.

  • UbcH5c regulates the p53, NF-κB, DNA repair, and p62 signaling pathways.

  • Targeting UbcH5c is a potential strategy for treating cancer and immune diseases.

Ubiquitination is a crucial post-translational modification (PTM) of proteins and regulates their stabilities and activities, thereby modulating multiple signaling pathways. UbcH5c, a member of the UbcH5 ubiquitin-conjugating enzyme (E2) protein family, engages in the ubiquitination of dozens of proteins and regulates nuclear factor kappa-B (NF-κB), p53 tumor suppressor, and several other essential signaling pathways. UbcH5c has been reported to be abnormally expressed in human cancer and immune disorders and is involved in the initiation and progression of these diseases. In this review, we mainly focus on UbcH5c structure, activity, signaling pathways, and its relevance to cancer and immune disorders. We end by integrating all known factors relating to UbcH5c inhibition as a potential cancer therapy method, and discuss associated challenges.

Introduction

Target proteins are linked with single or multiple ubiquitins, by which their stabilities, localizations, activities, and interactions with other proteins are changed. This PTM process of proteins, termed ‘ubiquitination’, is involved in diverse cellular processes, such as cell cycle progression, proliferation, apoptosis, differentiation, and gene expression and transcription 1, 2. The process of protein ubiquitination requires three types of enzyme: the ubiquitin-activating enzyme (E1), the ubiquitin-conjugating enzyme (E2), and the ubiquitin ligase (E3) 1, 2. E1 initially binds and transfers the ubiquitin to an E2 under an energy supply of ATP. Upon ubiquitin reception, E2 further transfers it to the target protein and forms the stable isopeptide linkages. E2 accomplishes this process by itself or via collaboration with an E3 [2].

Ubiquitin is a protein that comprises 76 amino acids, among which one methionine (Met) from the N terminus and seven lysines (Lys) can form polyubiquitin chains. The C terminus of ubiquitin can link to the target proteins for their ubiquitination [3]. There are six different topologies of ubiquitination, including monoubiquitination, multi-monoubiquitination, homogeneous ubiquitin chain, mixed ubiquitin chain, branched ubiquitin chain, and unanchored ubiquitin chain [4]. These topologies determine the ultimate fates of substrates. UbcH5c, also known as UBE2D3, engages in the protein ubiquitination and functions as an E2 [5]. UbcH5c forms ubiquitin chains on its substrates linked through K11, K48, and K63 [6]. As a ubiquitously expressed enzyme, UbcH5c exerts diverse catalytic actions, resulting in its multiple biological functions [4].

UbcH5c and another homologous E2, UbcH5b were discovered in 1995 [5]. These two E2s are similar in sequence with only four different amino acids. UbcH5c, UbcH5b, and two 88–90% identical E2s (i.e., UbcH5a and UbcH5d together have similar biological functions and constitute the UbcH5 protein family) [5]. UbcH5c and UbcH5b have similar activities in regulating the ubiquitination of their substrates, especially IκBα, p53, and p62 7, 8, 9. Knockdown or knockout of UbcH5b/c and co-inhibition of UbcH5b/c by small-molecule inhibitors blocked the ubiquitination and degradation of these client proteins 7, 8, 9, 10, 11. However, it is still unknown whether there is a significant difference between the functions of UbcH5c and UbcH5b because of the lack of methods that specifically inhibit UbcH5b or UbcH5c individually. Of note, UbcH5c shows the highest expression level among UbcH5 family members in all detected tissues and cell lines [5]. Nevertheless, the preference of the UbcH5 family might depend on the cellular context and the signaling pathways involved. In this review, we primarily focus on the biology and activity of UbcH5c and its signaling pathways, regulation, and relevance to cancer and immune disorders. The potential of UbcH5c as a cancer therapeutic target is also discussed.

Section snippets

Signaling pathways regulated by UbcH5c

As a ubiquitous enzyme, UbcH5c can catalyze the ubiquitination of a variety of proteins. UbcH5c has been frequently reported to be involved in four signaling pathways: NF-κB signaling, p53 signaling, p62-mediated autophagy, and DNA repair pathways. These signaling pathways have important roles in cancer and immune disorders.

UbcH5c and cancer

Directly or indirectly, UbcH5c shows inextricable links with cancer. The abnormal expression and activation of UbcH5c have been frequently observed in tumor tissues and cell lines from patients with cancer. Compared with the paired normal tissues, UbcH5c is overexpressed in thyroid oncocytic adenomas [48]. Similar studies and analyses have been applied to plasma samples from patients with colorectal cancer, 90% of whom have been found to have UbcH5c overexpression 49, 50. Moreover, compared

UbcH5c as a potential therapeutic target in cancer and immune disorders

UbcH5c is overexpressed in several types of human cancer and contributes to their initiation, progression, and metastasis by regulating various cancer-related signaling pathways. The role of NF-κB in cancer depends on the stages of the disease as well as the cellular context. In the specific types and stages of cancer, modulating NF-κB activity via UbcH5c could be a strategy for the prevention and treatment of these diseases. Considering the crucial role of p53 in cancer cell apoptosis,

Concluding remarks

Ubiquitination is a basic approach for cells to modify proteins and adjust the exertion of their biological activities. In recent years, ubiquitination has received increasing attention from researchers devoted to exploring effective cancer therapeutic strategies [108]. UbcH5c is a ubiquitous E2 with a crucial role in the ubiquitin-proteasome system. UbcH5c is overexpressed and activated in human cancers and immune disorders. UbcH5c inhibition by small molecules brings benefits to mice bearing

Acknowledgments

We thank the current and former members of our laboratories and collaborators for their contributions to the publications cited in this review article. The research field in UbcH5 is rapidly growing, and we apologize for not being able to cite all the recent publications, because of space limitations. This work was supported by National Natural Science Foundation of China (81903842, 81520108030, and 21472238), the National Key Research and Development Program of China (2017YFC1700200), Zhejiang

References (113)

  • B. Levine et al.

    Biological functions of autophagy genes: a disease perspective

    Cell

    (2019)
  • A. Chen

    Autoubiquitination of the BRCA1*BARD1 RING ubiquitin ligase

    J. Biol. Chem.

    (2002)
  • P.S. Brzovic

    A UbcH5/ubiquitin noncovalent complex is required for processive BRCA1-directed ubiquitination

    Mol. Cell

    (2006)
  • T.T. Paull

    A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage

    Curr. Biol.

    (2000)
  • C.P. Wardlaw

    TopBP1: a BRCT-scaffold protein functioning in multiple cellular pathways

    DNA Repair (Amst.)

    (2014)
  • Y. Honda

    Cooperation of HECT-domain ubiquitin ligase hHYD and DNA topoisomerase II-binding protein for DNA damage response

    J. Biol. Chem.

    (2002)
  • M. Gatti

    RNF168 promotes noncanonical K27 ubiquitination to signal DNA damage

    Cell Rep.

    (2015)
  • S. Zhang

    Identification of RNF8 as a ubiquitin ligase involved in targeting the p12 subunit of DNA polymerase delta for degradation in response to DNA damage

    J. Biol. Chem.

    (2013)
  • C. Escribano-Diaz

    A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice

    Mol. Cell

    (2013)
  • A. Kumar

    Identification of genes associated with tumorigenesis of meibomian cell carcinoma by microarray analysis

    Genomics

    (2007)
  • N. Erez

    Cancer-associated fibroblasts are activated in incipient neoplasia to orchestrate tumor-promoting inflammation in an NF-kappaB-dependent manner

    Cancer Cell

    (2010)
  • H. Jing et al.

    NF-kappaB in cellular senescence and cancer treatment

    Mol. Cells

    (2014)
  • A.R. Venkitaraman

    Multiplying functions for BRCA1 and BRCA2?. Meeting report, The Breakthrough Breast Cancer Second International Workshop on the function of BRCA1 and BRCA2, Cambridge, UK, 9-10 September 1999

    Biochim. Biophys. Acta

    (2000)
  • R. Hashizume

    The RING heterodimer BRCA1-BARD1 is a ubiquitin ligase inactivated by a breast cancer-derived mutation

    J. Biol. Chem.

    (2001)
  • I. Maeda

    In vitro ubiquitination of cyclin D1 by ROC1-CUL1 and ROC1-CUL3

    FEBS Lett.

    (2001)
  • H. Hattori

    RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells

    Blood

    (2007)
  • M.K. Mittal

    SLUG-induced elevation of D1 cyclin in breast cancer cells through the inhibition of its ubiquitination

    J. Biol. Chem.

    (2011)
  • N. Ohbayashi

    Physical and functional interactions between ZIP kinase and UbcH5

    Biochem. Biophys. Res. Commun.

    (2008)
  • Q.L. Sievers

    Genome-wide screen identifies cullin-RING ligase machinery required for lenalidomide-dependent CRL4(CRBN) activity

    Blood

    (2018)
  • S. Yogosawa

    Mammalian Numb is a target protein of Mdm2, ubiquitin ligase

    Biochem. Biophys. Res. Commun.

    (2003)
  • S. Vlachiotis et al.

    Lambda interferons in immunity and autoimmunity

    J. Autoimmun.

    (2019)
  • W. Zeng

    Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity

    Cell

    (2010)
  • A. Espinosa

    Anti-Ro52 autoantibodies from patients with Sjogren's syndrome inhibit the Ro52 E3 ligase activity by blocking the E3/E2 interface

    J. Biol. Chem.

    (2011)
  • R.B. Dodd

    Solution structure of the Kaposi's sarcoma-associated herpesvirus K3 N-terminal domain reveals a Novel E2-binding C4HC3-type RING domain

    J. Biol. Chem.

    (2004)
  • H.H. Ruan

    Identification of TRAF6 as a ubiquitin ligase engaged in the ubiquitination of SopB, a virulence effector protein secreted by Salmonella typhimurium

    Biochem. Biophys. Res. Commun.

    (2014)
  • J. Huang

    The poxvirus p28 virulence factor is an E3 ubiquitin ligase

    J. Biol. Chem.

    (2004)
  • J. Huang

    High-throughput screening for inhibitors of the e3 ubiquitin ligase APC

    Methods Enzymol.

    (2005)
  • E. Kudryashova

    Trim32 is a ubiquitin ligase mutated in limb girdle muscular dystrophy type 2H that binds to skeletal muscle myosin and ubiquitinates actin

    J. Mol. Biol.

    (2005)
  • X. Zhang

    Characterization and biological function analysis of the trim3a gene from zebrafish (Danio rerio)

    Fish Shellfish Immunol.

    (2012)
  • K.N. Swatek et al.

    Ubiquitin modifications

    Cell Res.

    (2016)
  • D. Popovic

    Ubiquitination in disease pathogenesis and treatment

    Nat. Med.

    (2014)
  • K.N. Swatek et al.

    Ubiquitin modifications

    Cell Res.

    (2016)
  • D. Komander et al.

    The ubiquitin code

    Annu. Rev. Biochem.

    (2012)
  • H. Peng

    Ubiquitylation of p62/sequestosome1 activates its autophagy receptor function and controls selective autophagy upon ubiquitin stress

    Cell Res.

    (2017)
  • H. Chen

    Discovery of potent small-molecule inhibitors of ubiquitin-conjugating enzyme UbcH5c from alpha-santonin derivatives

    J. Med. Chem.

    (2017)
  • J. Napetschnig et al.

    Molecular basis of NF-kappaB signaling

    Annu. Rev. Biophys.

    (2013)
  • A. Yaron

    Identification of the receptor component of the IkappaBalpha-ubiquitin ligase

    Nature

    (1998)
  • K. Wu

    The SCF(HOS/beta-TRCP)-ROC1 E3 ubiquitin ligase utilizes two distinct domains within CUL1 for substrate targeting and ubiquitin ligation

    Mol. Cell. Biol.

    (2000)
  • Z.P. Xia

    Direct activation of protein kinases by unanchored polyubiquitin chains

    Nature

    (2009)
  • N. Shembade

    Inhibition of NF-kappaB signaling by A20 through disruption of ubiquitin enzyme complexes

    Science

    (2010)
  • Cited by (10)

    View all citing articles on Scopus
    View full text