Tlr7 deletion alters expression profiles of genes related to neural function and regulates mouse behaviors and contextual memory
Introduction
The innate immune system acts as an alarm sensor to detect various pattern molecules and consequently induces cellular responses to these molecules. The pattern molecules include danger signals (such as foreign pathogens) as well as damage signals (such as intracellular molecules released from dead cells) (Czirr and Wyss-Coray, 2012). Toll-like receptors are the best-studied receptors for pattern molecule recognition (Kawai and Akira, 2010, Kawai and Akira, 2011). In addition to inducing innate immune responses, the original finding showed that the Drosophila Toll gene, the prototype of Toll-like receptors, controls dorso-ventral patterning during embryogenesis (Anderson et al., 1985, Hashimoto et al., 1988). Recent study also demonstrated that Drosophila Toll-6 and Toll-7 control wiring specificity of Drosophila olfactory circuit assembly (Ward et al., 2015). Accumulated studies evidence a role for Drosophila Tolls in development.
In the mammalian nervous system, endosomal TLR3, TLR7 and TLR8 and AIM2 inflammasomes are expressed in neurons and are involved in differential recognition of nucleic acids (Chen et al., 2017, Hung et al., 2018, Liu et al., 2013, Liu et al., 2015, Wu et al., 2017, Wu et al., 2016). For instance, both TLR7 and TLR8 recognize single-stranded RNA (ssRNA). TLR7 can also bind several different uridine-rich miRNAs (such as Let-7, miR-21 and miR-29a) released from other cells through exosomes (Fabbri et al., 2012, Lehmann et al., 2012, Liu et al., 2015). TLR3 is specific for double-stranded RNA (dsRNA) and can recognize heterologous RNAs released from necrotic cells (Kariko et al., 2004). In the absence of infection, injury-induced acute inflammation requires TLR3 (Cavassani et al., 2008), further supporting a role for TLR3 in recognition of self nucleic acids. Since TLR3 and TLR7 are localized at endosomes to recognize their ligands, they are also able to act as sensors of intraneuronal distress by detecting nucleic acids derived from autophagosomes in the same cells (Czirr and Wyss-Coray, 2012). Thus, dying cells, exosomes and autophagosomes are sources of endogenous ligands that can activate TLR3 and TLR7. Consequently, in the absence of exogenous pathogens, TLR3, TLR7 and TLR8 fine-tune neuronal morphology by detecting endogenous ligands during neuronal development or under intrinsic stress conditions. Reduced expression or deletion of Tlr3, Tlr7 and Tlr8 genes in neurons is sufficient to promote dendritic extension of neurons (Chen et al., 2017, Hung et al., 2018, Liu et al., 2013, Liu et al., 2015). Therefore, deletion of Tlr3, Tlr7 or Tlr8 is expected to impact brain function and activity.
Indeed, Tlr3 deletion in mice alters hippocampus- and amygdala-dependent memory. Tlr3 KO mice performed better in Morris water maze, novel object recognition and contextual fear conditioning assays, which are hippocampus-associated behavioral paradigms. However, amygdala-dependent behaviors, including anxiety, were impaired in these Tlr3 KO mice (Okun et al., 2010). Although it is unclear why Tlr3 deletion has such contrasting effects on hippocampus- and amygdala-dependent behaviors, these behavioral assays support the hypothesis that TLR3 is required for brain function.
TLR7 has been proven to sense endogenous ssRNA, and TLR7 activation restricts axonal and dendritic growth of neurons (Liu et al., 2013, Liu et al., 2015). Tlr7 knockdown via in utero electroporation at embryonic day 15.5 results in more complex dendritic arbors of cortical neurons at P7 and P14 but not P21 (Liu et al., 2013), suggesting that neuronal morphology is more sensitive to Tlr7 deletion at earlier developmental stages. To further dissect the role of TLR7 in the nervous system, in this report, we first employed next generation sequencing to investigate the roles of TLR7 in young and mature cultured neurons. A series of behavioral paradigms were then applied to analyze the impact of Tlr7 deletion on brain functions. Our study suggests that young and mature neurons exhibit different transcriptomic profiles upon Tlr7 deletion, which may influence neuronal function and regulate mouse behaviors. Our results strengthen the evidence for a crucial role of TLR7 in brain function.
Section snippets
Cell culture, RNA-seq and bioinformatics analyses
Mouse cortical and hippocampal mixed neuronal cultures were grown in Neurobasal medium/DMEM (1:1) with B27 supplement, as described (Hung et al., 2018). Total RNA was extracted from wild-type or Tlr7 KO cultured neurons at 4 and 18 days in vitro (DIV) using Trizol (Invitrogen). RNA quality and quantifications were determined using an Agilent 2100 Bioanalyzer. The mRNA sequencing libraries were prepared using a Truseq Stranded mRNA kit (Illumina) and 75–76 cycle single-read sequencing was
Tlr7 deletion alters gene expression in young cultured neurons
To investigate the function of TLR7 in neurons, we performed transcriptomic profiling using next generation sequencing to analyze hippocampal and cortical mixed cultures prepared from Tlr7 KO and WT mice. RNAs were harvested from cultured neurons at 4 and 18 DIV to represent young and mature neurons for analysis (Liu et al., 2013, Shih et al., 2014, Shih and Hsueh, 2016, Wang et al., 2011b). We first performed RNA-seq using neurons at 4 DIV and used two different analyses for transcriptomic
Discussion
In this report, we have provided evidence that TLR7 is able to regulate expression of different sets of genes in young and mature neuronal cultures. Our bioinformatics analyses show that Tlr7 deletion reduces the expression of a great variety of genes involved in synaptic organization and plasticity as well as neuronal development at 4 DIV. Interestingly, these TLR7-regulated genes are highly relevant to neurological and psychological disorders. At 18 DIV, there is a shift in TLR7-regulated
Conclusion
Combining transcriptomic analysis and behavioral assays, we have demonstrated that TLR7 regulates the expression of genes critical for neuronal development and activity, as well as glial cell differentiation, and that it controls mouse behaviors. Our results reinforce evidence for the critical role of the innate immune system in controlling brain function.
Acknowledgements
This work was supported by grants from Academia Sinica, the Ministry of Science and Technology (MOST 106-2321-B-001-019and 105-2311-B-001-061-MY3) and the Simons Foundation (SFARI#388449) to Y.-P. Hsueh. We thank Dr. Tzyy-Nan Huang at Dr. Yi-Ping Hsueh’s laboratory, Dr. Shu-Yun Tung at the Genomics Core, Ruei-Lin Chiang and Dr. Paul Wei-Che Hsu at the Bioinformatics Core, and the Animal Facility of the Institute of Molecular Biology, Academia Sinica, and Dr. Sin-Jhong Cheng at the
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