[6] Blocks database and its applications
References (45)
Curr. Opin. Struct. Biol.
(1994)- et al.
Genomics
(1994) - et al.
J. Mol. Biol.
(1994) - et al.
Gene
(1995) - et al.
J. Biol. Chem.
(1994) - et al.
J. Mol. Biol.
(1990) - et al.
J. Mol. Biol.
(1981) J. Mol. Biol.
(1991)- et al.
- et al.
J. Mol. Biol.
(1990)
J. Mol. Biol.
J. Mol. Biol.
EMBO J.
Science
Nature (London)
Nucleic Acids Res.
Nucleic Acids Res.
Nucleic Acids Res.
Nucleic Acids Res.
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2019, GenomicsCitation Excerpt :Different methods of similarity among the DORs allow inferring functional and evolutionary relationships among the sequences [5-9]. There exist some methodologies for the analysis of protein sequences in classifying them [10-17]. The next-generation sequencing technologies produce huge datasets that have to be systematically analyzed with novel computational algorithms.
Assessing the best edit in perturbation-based iterative refinement algorithms to compute the median string
2019, Pattern Recognition LettersBioinformatics analysis to assess potential risks of allergenicity and toxicity of HRAP and PFLP proteins in genetically modified bananas resistant to Xanthomonas wilt disease
2017, Food and Chemical ToxicologyCitation Excerpt :The full-length FASTA3 was the primary search which gives optimum alignments using the default criteria defined by Pearson (1999). The default scoring matrix is BLOSUM 50 (Henikoff and Henikoff, 1992, 1996). The penalty for each gap inserted into query or searched sequences to obtain optimal alignments is calculated as (q + r*k), where q (10) is an initial penalty for each independent gap, r (2) is a penalty for each aa position within the gap and k is the number of aa positions within the gap (Reese and Pearson, 2002).
Evaluation of Bar, Barnase, and Barstar recombinant proteins expressed in genetically engineered Brassica juncea (Indian mustard) for potential risks of food allergy using bioinformatics and literature searches
2015, Food and Chemical ToxicologyCitation Excerpt :The default search and scoring described in the Allergenonline.org database website were used. The default scoring matrix is BLOSUM 50 (Henikoff and Henikoff, 1992, 1996). The gap penalty for each inserted gap in the query or aligned protein sequences is calculated as (−q + −r*k), where q (10) is an initial penalty for each independent gap, r (2) is a penalty for each amino acid position within the gap and k is the number of amino acid positions within the gap (Reese and Pearson, 2002), default word size (ktup) two (Pearson, 2000), and an expectation value score (E-value) of 1 (highest number, representing similarity potential significant alignment in the small AOL database).