Experimental and theoretical evidences of conformational flexibility of C-glycosides. NMR analysis and molecular mechanics calculations of C-lactose and its O-analogue
NMR data (NOEs and coupling constants) and MM3∗ molecular mechanics calculations have allowed to demonstrate that the conformational behaviour of C-lactose is different of its O-analogue.
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Adsorption of difructose dianhydrides on hydrophobic Y-zeolites
2020, Microporous and Mesoporous MaterialsCitation Excerpt :Its orientation towards the anomeric substituent is commonly regarded as the nature of the anomeric effect. Indeed, MM3, which is similar to MM+, was shown to be sensitive to the anomeric effect [36], but MM2 and MM3 commonly underestimate its extent [37]. Hence the force field analysis per se is unsure.
Limitations in the description of conformational preferences of C-disaccharides: The (1 → 3)-C-mannobiose case
2017, Carbohydrate ResearchCitation Excerpt :In a pioneering work of Kishi it was postulated that preferred conformations of C-disaccharides are similar to their O-counterparts [32–35]. However, it was later shown that this assumption based on semi quantitative analysis of NMR data should be complemented by molecular modeling calculations [36] in order to cover all possible conformers present in solution. The complete conformational analysis identifying all possible conformations seems to be important because in some cases a less populated (unbound state) conformer can be preferentially recognized by a protein as was discovered for C-glycosyl derivative of β-1,3-linked lactose derivative bound by human lectin galectin-1 [37].
The conformational behaviour of the C-glycosyl analogue of sulfatide studied by NMR in SDS micelles
2007, Carbohydrate ResearchThe solution conformation of C-glycosyl analogues of the sialyl-Tn antigen
2007, Carbohydrate ResearchConformational behaviour of glycomimetics: NMR and molecular modelling studies of the C-glycoside analogue of the disaccharide methyl β-d-galactopyranosyl-(1→3)-β-d-glucopyranoside
2007, Carbohydrate ResearchCitation Excerpt :These results are consistent with previous computational studies performed for β-(1→3) linkages. For instance, the mm39 energy maps of β-laminarabiose (β-Glc-(1→3)-β-Glc) and β-Gal-(1→3)-β-GlcNAc are very similar to that of 2.10 More recently, the conformational behaviour around the β-(1→3) linkage of β-laminarabiose was investigated in detail through molecular dynamics (MD) simulations in water.11
The conformation of the C-glycosyl analogue of N-acetyl-lactosamine in the free state and bound to a toxic plant agglutinin and human adhesion/growth-regulatory galectin-1
2007, Carbohydrate ResearchCitation Excerpt :Therefore, as a next step, molecular mechanics and dynamics calculations were performed.11 The potential energy surfaces in the Φ/Ψ-angle space for four independent starting geometries of 1 (varying the C5–C6 ω torsion12 for the Gal (gt/tg) and GlcNAc (gg/gt) moieties) were calculated with the mm3∗ force field13 as integrated in macromodel,14 and compared to those of the parental O-glycoside (see Table 2). Four and three minima are predicted for the C- and O- compounds, and with completely different relative population densities.