Skip to main content

Advertisement

Log in

Molecular identification and pathogenicity of Rhizoctonia spp. from tobacco growing areas in northwestern Argentina

  • Published:
Tropical Plant Pathology Aims and scope Submit manuscript

Abstract

In Argentina, more than 60 % of the tobacco crops are grown in the northwestern part of the country and where Rhizoctonia solani leads to a reduction in crop yield and quality. In this study, 35 isolates of Rhizoctonia were obtained from 32 tobacco fields in northwestern Argentina and characterized by both morphological and molecular approaches. Based on the variability in the ITS region, isolates were identified as R. solani (80 %), Waitea circinata var. zeae (Rhizoctonia zeae) (8 %) and binucleate Rhizoctonia (8 %). Most isolates of R. solani belonged to the anastomosis groups (AGs) AG 4 HG-I (44 %), AG 2-1 (41 %) and AG 4 HG-III (13 %). Isolates of binucleate Rhizoctonia belonged to AG-F and AG-P of Ceratobasidium sp. Morphological variability was higher within isolates of AG 2-1 and AG 4 HG-III than within those of AG 4 HG-I. Aggressiveness of the isolates towards tobacco seedlings was assessed in the greenhouse. Isolates of AG 2-1 were the most aggressive on leaves, causing target spot, whereas isolates of AG 4 HG-I were the most aggressive on stems and roots, causing damping-off.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Alfenas A, Valverde E, Gomeide E, Ferreira A, Murilo F, Pereira F, Rogeiro J, Grassi L, Maffia L, Pereira O, Alfenas P, Gonçalves R, Gonçalves R, D’Arc R, Dos Santos W (2007) Métodos em Fitopatologia. Brasil. Ed. Universidade de Visçosa, Visçosa

    Google Scholar 

  • Bacharis C, Gouziotis A, Kalogeropoulou P, Koutita O, Tzavella-Klonari K, Karaoglanidis G (2010) Characterization of Rhizoctonia spp. isolates associated with damping-off disease in cotton and tobacco seedlings in Greece. Plant Dis 94:1314–1322

    Article  CAS  Google Scholar 

  • Carling D (1996) Grouping in Rhizoctonia solani by hyphal anastomosis reaction. In: Sneh B, Jabaji-Hare S, Neate S, Dijst G (eds) Rhizoctonia Species: taxonomy, molecular biology, ecology, pathology and disease control. Kluwer Academic Publishers, Dordrecht, pp 37–47

    Chapter  Google Scholar 

  • Ceresini PC, Shew HD, Vilgalys RJ, Cubeta MA (2002) Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina. Mycologia 94:437–449

    Article  CAS  PubMed  Google Scholar 

  • Csinos AS, Stephenson MG (1999) Evaluation of fungicides and tobacco cultivar resistance to Rhizoctonia solani incited target spot, damping-off and sore shin. Crop Prot 18:373–377

    Article  CAS  Google Scholar 

  • Food and Agriculture Organization-FAO (2012) Production Crops 2012. http://www.faostat.fao.org/site/567/default.aspx#ancor.html. Accessed 3 Oct 2014

  • Garcia MG, Ramos ER, Chacon OC, Bocourt YP, Ochoa RR (2009) First report of binucleate Rhizoctonia causing damping-off in tobacco seedlings in Cuba. Fitosanidad 13:221

    Google Scholar 

  • Godoy-Lutz G, Steadman JR, Higgins B, Powers K (2003) Genetic variation among isolates of the web blight pathogen of common bean based on PCR–RFLP of the ITS-rDNA region. Plant Dis 87:766–771

    Article  CAS  Google Scholar 

  • Godoy-Lutz G, Kuninaga S, Steadman JR, Powers K (2008) Phylogenetic analysis of Rhizoctonia solani subgroups associated with web blight symptoms on common bean based on ITS-5.8S rDNA. J Gen Plant Pathol 74:32–40

    Article  CAS  Google Scholar 

  • González García M (2008) Aspectos de sistemática y biología del complejo Rhizoctonia. Fitosanidad 12:147–159

    Google Scholar 

  • González M, Pujol M, Metraux J, González-García V, Bolton M, Borrás-Hidalgo O (2011) Tobacco leaf spot and root rot caused by Rhizoctonia solani Künh. Mol Plant Pathol 12(3):209–216

    Article  PubMed  Google Scholar 

  • Gurkanli CT, Ozkoc I (2011) First report of B.N. Rhizoctonia from Tobacco (Nicotiana tabacum L.) in Samsum, Turkey. Pak J Bot 43:51–57

    CAS  Google Scholar 

  • Gurkanli CT, Ozkoc I, Gunduz I (2009) Molecular and conventional identification and pathogenicity of Rhizoctonia solani isolates from tobacco (Nicotiana tabacum L.) in Samsun, Turkey. J Phytopathol 157:686–696

    Article  CAS  Google Scholar 

  • Gutierrez WA, Shew HD, Melton TA (1997) Sources of inoculum and management for Rhizoctonia solani damping-off on tobacco transplants under greenhouse conditions. Plant Dis 81:604–606

    Article  Google Scholar 

  • Hall T (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95–98. Available at: http://www.mbio.ncsu.edu/bioedit/bioedit.html. Accessed 6 Oct 2014

  • Johnk JS, Jones RK (1993) Differentiation of population of AG-2-2 of Rhizoctonia solani by analysis of fatty acids. Phytopathology 83:278–283

    Article  CAS  Google Scholar 

  • Jones RK, Belmar SB (1989) Characterization and pathogenicity of Rhizoctonia spp. isolated from rice, soybean, and other crops grown in rotation with rice in Texas. Plant Dis 73:1004–1010

    Article  Google Scholar 

  • Laroche JP, Jabaji-Hare S, Charest PM (1992) Differentiation of two anastomosis groups of Rhizoctonia solani by isozyme analysis. Phytopathology 82:1387–1393

    Article  CAS  Google Scholar 

  • Li H, Wu B, Yan S (1998) Aetiology of Rhizoctonia in sheath blight of maize in Sichuan. Plant Pathol 47:16–21

    Article  Google Scholar 

  • Liu ZL, Sinclair JB (1993) Differentiation of intraspecific groups within anastomosis group I of Rhizoctonia solani using ribosomal DNA internal transcribed spacer and isozyme analysis. Can J Plant Pathol 12:376–382

    Article  Google Scholar 

  • Liu ZL, Domier LL, Sinclair JB (1993) ISG-specific ribosomal DNA polymorphism of the Rhizoctonia solani species complex. Mycologia 85:795–800

    Article  CAS  Google Scholar 

  • Lucas G (1975) Diseases of Tobacco. 3rd ed. Biological Consulting Associates, Box 5726. Raleigh, North Carolina. Parker and Sons Printers

  • Masuka AJ (1998) Binucleate Rhizoctonia on tobacco in Zimbawe. Plant Dis 82:263

    Article  Google Scholar 

  • Mercado Cárdenas G, Galván M, Barrera V, Carmona M (2012) First report of target spot of tobacco caused by Rhizoctonia solani (AG-2.1). Plant Dis 96:456

    Article  Google Scholar 

  • Nicoletti R, Lahoz E (1995) Recovery of Rhizoctonia solani AG-5 from tobacco in Italy. Plant Dis 79:540

    Article  Google Scholar 

  • Nicoletti R, Lahoz E, Kanematsu S, Naito S, Contillo R (1999) Characterization of Rhizoctonia solani isolates from tobacco fields related to anastomosis groups 2-1 and BI (AG 2-1 and AG BI). J Phytopathol 147:71–77

    Article  CAS  Google Scholar 

  • Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358

    CAS  PubMed  Google Scholar 

  • Pascual CB, Toda T, Raymondo AD, Hyakumachi M (2000) Characterization by conventional techniques and PCR of Rhizoctonia solani isolates causing banded leaf sheath blight in maize. Plant Pathol 49:108–118

    Article  CAS  Google Scholar 

  • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proc Nat Acad Sci 109:6241–6246

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Sharon M, Kuninaga S, Hyakumachi M, Sneh B (2006) The advancing identification and classification of Rhizoctonia spp. using molecular and biotechnological methods compared with the classical anastomosis grouping. Mycoscience 47:299–316

    Article  CAS  Google Scholar 

  • Sharon M, Kuninaga S, Hyakumachi M, Naito S, Sneh B (2008) Classification of Rhizoctonia spp. using rDNA-ITS sequence analysis supports the genetic basis of the classical anastomosis grouping. Mycoscience 49:93–114

    Article  CAS  Google Scholar 

  • Sherwood RT (1969) Morphology and physiology in four anastomosis groups of Thanatephorus cucumeris. Phytopathology 59:1924–1929

    Google Scholar 

  • Shew HD, Lucas GB (1991) Compendium of tobacco diseases. The American Phytopathological Society Press, St. Paul

    Google Scholar 

  • Shew HD, Melton TA (1995) Target spot of tobacco. Plant Dis 79:6–11

    Article  Google Scholar 

  • Sneh B, Burpee L, Ogoshi A (1991) Identification of Rhizoctonia species. The American Phytopathological Society, APS Press, EE.UU

    Google Scholar 

  • Stenglein SA, Balatti PA (2006) Genetic diversity of Phaeoisariopsis griseola in Argentina as revealed by virulence and molecular markers. Physiol Mol Plant Pathol 68:158–167

    Article  CAS  Google Scholar 

  • Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sinauer Associates, Sunderland, Massachusetts, USA

  • Tarantino P, Caiazzo R, Carella A, Lahoz E (2007) Control of Rhizoctonia solani in a tobacco-float system using low rates of iprodione and iprodione-resistant strains of Gliocladium roseum. Crop Prot 26:1298–1302

    Article  CAS  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Thorn RG, Reddy CA, Harris D, Paul EA (1996) Isolation of saprophytic Basidiomycetes from soil. Appl Environ Microbiol 62:4288–4292

    PubMed Central  CAS  PubMed  Google Scholar 

  • Tu C, Hsieh T, Chang Y (1996) Vegetable diseases incited by Rhizoctonia sp. In: Sneh B, Jabaji-Hare S, Neate S, Dijst G (eds) Rhizoctonia Species: taxonomy, molecular biology, ecology, pathology and disease control. Kluwer Academic Publishers, Dordrecht, pp 369–377

    Chapter  Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press Inc, New York, pp 315–322

    Google Scholar 

  • Zhao Y, Wu Y, Fu Y, An M, Chen J, Zhao X (2013) Characterization of Rhizoctonia solani AG-3 isolates causing Target Spot of Flue-cured Tobacco in China. Adv Mater Res 17:4321–4325

    Article  Google Scholar 

Download references

Acknowledgments

We thank C. Sanchez for statistical advice. Thanks are also given to Instituto Nacional de Tecnología Agropecuaria for providing a doctorate fellowship for the first author and support by means of research grants (PNIN082511 and PRSalJu09).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Guadalupe E. Mercado Cárdenas.

Additional information

Section Editor: Adalberto Café-Filho

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Mercado Cárdenas, G.E., Galván, M.Z., Barrera, V.A. et al. Molecular identification and pathogenicity of Rhizoctonia spp. from tobacco growing areas in northwestern Argentina. Trop. plant pathol. 40, 160–168 (2015). https://doi.org/10.1007/s40858-015-0035-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s40858-015-0035-7

Keywords

Navigation