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Replication of genomewide association studies on age at menarche in the Korean population

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Abstract

Early menarche is associated with adverse health outcomes, including breast cancer, endometrial cancer, obesity, type 2 diabetes, and cardiovascular disease. Recently, a genomewide association study (GWAS) of age at menarche (AAM) in 104,533 individuals of European ancestry was reported by the ReproGen consortium. They identified 42 loci known and novel loci that were linked to age at menarche. Because age at menarche varies between ethnic groups, we decided to investigate if these results would be replicated in the Korean population. To this end, we examined the association of the SNPs reported in the ReproGen GWAS with AAM in 3,194 individuals from the Korean Genome and Epidemiology Study (KoGES) cohort. Genotype data for total 17 SNPs (6 genotyped SNPs and 11 imputed SNPs) were available for the association analysis using linear regression analysis for age at menarche with controlling current age, waist-to-hip ratio, and body mass index as the covariates. We found replication of the ReproGen study in two SNPs; one SNP (rs466639) in the retinoic acid receptor gamma gene (RXRG), showing a significant association with early menarche (beta = −0.224 ± 0.065, p value = 5.2 × 10−4, Bonferroni-corrected p value = 0.009), and the other (rs10899489), in GRB2 (growth factor receptor bound protein 2)-associated binding protein 2 (GAB2), linked to late menarche (beta = 0.140 ± 0.047, p value = 2.8 × 10−3, Bonferroni-corrected p value = 0.049). This result possibly suggests that genetic factors governing AAM in the Korean population would be distinct from those in the Europeans, implying roles of modulating or interacting factors in determining AAM, including environmental factors such as nutritional status.

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References

  • Cho YS, Go MJ, Kim YJ, Heo JY, Oh JH, Ban HJ, Yoon D, Lee MH, Kim DJ, Park M et al (2009) A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. Nat Genet 41:527–534

    Article  PubMed  CAS  Google Scholar 

  • Cho GJ, Park HT, Shin JH, Hur JY, Kim YT, Kim SH, Lee KW, Kim T (2010) Age at menarche in a Korean population: secular trends and influencing factors. Eur J Pediatr 169:89–94

    Article  PubMed  Google Scholar 

  • Dollé P (2009) Developmental expression of retinoic acid receptors (RARs). Nucl Recept Signal 7:e006

    PubMed  Google Scholar 

  • Elks CE, Perry JR, Sulem P, Chasman DI, Franceschini N, He C, Lunetta KL, Visser JA, Byrne EM, Cousminer DL et al (2010) Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. Nat Genet 42:1077–1085

    Article  PubMed  CAS  Google Scholar 

  • Gauderman WJ and Morrison JM (2006) QUANTO 1.1: A computer program for power and sample size calculations for genetic epidemiology studies, http://hydra.usc.edu/gxe, version 1.2.4, May 2009

  • He C, Kraft P, Chen C, Buring JE, Paré G, Hankinson SE, Chanock SJ, Ridker PM, Hunter DJ, Chasman DI (2009) Genome-wide association studies identify loci associated with age at menarche and age at natural menopause. Nat Genet 41:724–728

    Article  PubMed  CAS  Google Scholar 

  • He C, Zhang C, Hunter DJ, Hankinson SE, Buck Louis GM, Hediger ML, Hu FB (2010) Age at menarche and risk of type 2 diabetes: results from 2 large prospective cohort studies. Am J Epidemiol 171:334–344

    Article  PubMed  Google Scholar 

  • Heinemeyer T, Wingender E, Reuter I, Hermjakob H, Kel AE, Kel OV, Ignatieva EV, Ananko EA, Podkolodnaya OA, Kolpakov FA et al (1998) Databases on transcriptional regulation: TRANSFAC, TRRD, and COMPEL. Nucleic Acids Res 26:364–370

    Article  Google Scholar 

  • Hong KW, Lim JE, Kim YJ, Cho NH, Shin C, Oh B (2010) KARE genomewide association study of blood pressure using imputed SNPs. Genomics Inform 8:103–107

    Article  Google Scholar 

  • Howie BN, Donnelly P, Marchini J (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. Plos Genet 5:e1000529

    Article  PubMed  Google Scholar 

  • Johnson AD, Handsaker RE, Pulit S, Nizzari MM, O’Donnell CJ, de Bakker PIW (2008) SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap. Bioinformatics 24:2938–2939

    Article  PubMed  CAS  Google Scholar 

  • Kvale G (2003) Reproductive factors in breast cancer epidemiology. Acta Oncol 31:187–194

    Article  Google Scholar 

  • Lakshman R, Forouhi NG, Sharp SJ, Luben R, Bingham SA, Khaw KT, Wareham NJ, Ong KK (2009) Early age at menarche associated with cardiovascular disease and mortality. J Clin Endocrinol Metab 94:4953–4960

    Article  PubMed  CAS  Google Scholar 

  • Li S, Lu MM, Zhou D, Hammes SR, Morrisey EE (2007) GLP-1: a novel zinc finger protein required in somatic cells of the gonad for germ cell development. Dev Biol 301:106–116

    Article  PubMed  CAS  Google Scholar 

  • Ong KK, Northstone K, Wells JC, Rubin C, Ness AR (2007) Golding J and Dunger DB (2007) Earlier mother’s age at menarche predicts rapid infancy growth and childhood obesity. Plos Med 4:e132

    Article  PubMed  Google Scholar 

  • Ong KK, Elks CE, Li S, Zhao JH, Luan J, Andersen LB, Bingham SA, Brage S, Smith GD, Ekelund U et al (2009) Genetic variation in LIN28B is associated with timing of puberty. Nat Genet 41:729–733

    Article  PubMed  CAS  Google Scholar 

  • Parent AS, Teilmann G, Juul A, Skakkebaek NE, Toppari J, Bourguignon JP (2003) The timing of normal puberty and the age limits of sexual precocity:variations around the world secular trends, and changes after migration. Endocr Rev 24:668–693

    Article  PubMed  Google Scholar 

  • Perry JR, Stolk L, Franceschini N, Lunetta KL, Zhai G, McArdle PF, Smith AV, Aspelund T, Bandinelli S, Boerwinkle E et al (2009) Meta-analysis of genome-wide association data identifies two loci influencing age at menarche. Nat Genet 41:648–650

    Article  PubMed  CAS  Google Scholar 

  • Pierce MB, Leon DA (2005) Age at menarche and adult BMI in the Aberdeen Children of the 1950’s Cohort Study. Am J Clin Nutr 82:733–739

    PubMed  CAS  Google Scholar 

  • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ et al (2007) PLINK: a toolset for whole-genome association and population-based linkage analysis. Am J Hum Genet 81:559–575

    Article  PubMed  CAS  Google Scholar 

  • Purdie DM, Green AC (2001) Epidemiology of endometrial cancer. Best Pract Res Clin Obstet Gynaecol 15:341–354

    Article  PubMed  CAS  Google Scholar 

  • Sulem P, Gudbjartsson DF, Rafnar T, Holm H, Olafsdottir EJ, Olafsdottir GH, Jonsson T, Alexandersen P, Feenstra B, Boyd HA et al (2009) Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche. Nat Genet 41:734–738

    Article  PubMed  CAS  Google Scholar 

  • Towne B, Czerwinski SA, Demerath EW, Blangero J, Roche AF, Siervogel RM (2005) Heritability of age at menarche in girls from the Fels Longitudinal Study. Am J Phys Anthropol 128:210–219

    Article  PubMed  Google Scholar 

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Acknowledgments

This work was supported by the Korean Genome Analysis Project (4845-301) and the KoGES (4851-302), funded by the Ministry for Health and Welfare, Republic of Korea.

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Correspondence to Yeonjung Kim.

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Hong, KW., Kim, CS., Min, H. et al. Replication of genomewide association studies on age at menarche in the Korean population. Genes Genom 35, 69–75 (2013). https://doi.org/10.1007/s13258-013-0060-1

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