Abstract
The infection of Bombyx mori nucleopolyhedrovirus (BmNPV) is one of the main causes of economic losses in sericulture. Thus, it is essential to establish rapid and effective method for BmNPV detection. In the present study, we have developed a recombinase-aided amplification (RAA) to amplify the BmNPV genomic DNA at 37 °C within 30 min, and achieved a rapid detection method by coupling with a lateral flow dipstick (LFD). The RAA-LFD method had a satisfactory detection limit of 6 copies/μL of recombinant plasmid pMD19-T-IE1, and BmNPV infection of silkworm can be detected 12 h post-infection. This method was highly specific for BmNPV, and without cross-reactivity to other silkworm pathogens. In contrast to conventional polymerase chain reaction (PCR), the RAA-LFD assay showed higher sensitivity, cost-saving, and especially is apt to on-site detection of BmNPV infection in the sericulture production.
Similar content being viewed by others
Data availability
No data was used for the research described in the article.
References
Bao Y, Tang X, Lv Z, Wang X, Tian C, Xu Y, Zhang C (2009) Gene expression profiling of resistant and susceptible Bombyx mori strains reveals nucleopolyhedrovirus-associated variations in host gene transcript levels. Genomics 94:138–145. https://doi.org/10.1016/j.ygeno.2009.04.003
Borchers A, Pieler T (2023) Programming pluripotent precursor cells derived from Xenopus embryos to generate specific tissues and organs. Genes (basel) 1:413–426. https://doi.org/10.3390/genes1030413
Chen C, Li XN, Li GX, Zhao L, Duan SX, Yan TF, Feng ZS, Ma XJ (2018) Use of a rapid reverse-transcription recombinase aided amplification assay for respiratory syncytial virus detection. Diagn Microbiol Infect Dis 90:90–95. https://doi.org/10.1016/j.diagmicrobio.2017.10.005
Chen W, Fan J, Li Z, Zhang Y, Qin Y, Wu K, Li X, Li Y, Fan S, Zhao M (2021) Development of recombinase aided amplification combined with disposable nucleic acid test strip for rapid detection of Porcine circovirus type 2. Front Vet Sci 8:676294. https://doi.org/10.3389/fvets.2021.676294
Chen Y, Zong N, Ye F, Mei Y, Qu J, Jiang X (2023) Dual-CRISPR/Cas12a-assisted RT-RAA for ultrasensitive SARS-CoV-2 detection on automated centrifugal microfluidics. Anal Chem 94:9603–9609. https://doi.org/10.1021/acs.analchem.2c00638
Fan X, Li L, Zhao Y, Liu Y, Liu C, Wang Q, Dong Y, Wang S, Chi T, Song F, Sun C, Wang Y, Ha D, Zhao Y, Bao J, Wu X, Wang Z (2020) Clinical validation of two recombinase-based isothermal amplification assays (RPA/RAA) for the rapid detection of African swine fever virus. Front Microbiol 11:1696. https://doi.org/10.3389/fmicb.2020.01696
Fu Z, He X, Cai S, Liu H, He X, Li M, Lu X (2016) Quantitative PCR for detection of Nosema bombycis in single silkworm eggs and newly hatched larvae. J Microbiol Methods 120:72–78. https://doi.org/10.1016/j.mimet.2015.12.003
Gill P, Ghaemi A (2008) Nucleic acid isothermal amplification technologies: a review. Nucleosides Nucleotides Nucleic Acids 27:224–243. https://doi.org/10.1080/15257770701845204
Glais L, Jacquot E (2015) Detection and characterization of viral species/subspecies using isothermal recombinase polymerase amplification (RPA) assays. Methods Mol Biol 1302:207–225. https://doi.org/10.1007/978-1-4939-2620-6_16
Gomi S, Majima K, Maeda S (1999) Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus. J Gen Virol 80:1323–1337. https://doi.org/10.1099/0022-1317-80-5-1323
Gui L, Zhao Y, Xu D, Li X, Luo J, Zhou W, Li M (2022) Quick detection of Carassius auratus herpesvirus (CaHV) by recombinase-aid amplification lateral flow dipstick (RAA-LFD) method. Front Cell Infect Microbiol 12:981911. https://doi.org/10.3389/fcimb.2022.981911
Guo Z, Xing G, Li P, Jin Q, Lu Q, Zhang G (2023) Development and application of a recombinase-aided amplification and lateral flow assay for rapid detection of pseudorabies virus from clinical crude samples. Int J Biol Macromol 1:646–652. https://doi.org/10.1016/j.ijbiomac.2022.10.153
He Z, Ni Q, Song Y, Wang R, Tang Y, Wu Y, Liu L, Bao J, Chen J, Long M, Wei J, Li C, Li T, Zhou Z, Pan G (2019) Development of a nucleic acid lateral flow strip for rapid, visual detection of Nosema bombycis in silkworm eggs. J Invertebr Pathol 164:59–65. https://doi.org/10.1016/j.jip.2019.04.004
Huang W, Wei H, Wang C, Wang J, Chen L, Chen W, Liu Y, Zheng Y, Lin M (2023) Establishment and preliminary evaluation of a fluorescent recombinase-aided amplification/CRISPR-Cas12a system for rapid detection of Plasmodium falciparum. Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi 35:38–43. https://doi.org/10.16250/j.32.1374.2022240
Jiang L, Xia Q (2014) The progress and future of enhancing antiviral capacity by transgenic technology in the silkworm Bombyx mori. Insect Biochem Mol Biol 48:1–7. https://doi.org/10.1016/j.ibmb.2014.02.003
Kang W, Suzuki M, Zemskov E, Okano K, MaedA S (1999) Characterization of baculovirus repeated open reading frames (bro) in Bombyx mori nucleopolyhedrovirus. J Virol 73:10339–10345. https://doi.org/10.1128/JVI.73.12.10339-10345.1999
Kiatpathomchai W, Jaroenram W, Arunrut N, Jitrapakdee S, Flegel TW (2008) Shrimp Taura syndrome virus detection by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick. J Virol Methods 153:214–217. https://doi.org/10.1016/j.jviromet.2008.06.025
Kursa O, Wozniakowski G, Tomczyk G, Sawicka A, Minta Z (2015) Rapid detection of Mycoplasma synoviae by loop-mediated isothermal amplification. Arch Microbiol 197:319–325. https://doi.org/10.1007/s00203-014-1063-2
Piepenburg O, Williams CH, Stemple DL, Armes NA (2006) DNA detection using recombination proteins. PLoS Biol 4:1115–1121. https://doi.org/10.1371/journal.pbio.0040204
Rahman MM, Gopinathan KP (2004) Systemic and in vitro infection process of Bombyx mori nucleopolyhedrovirus. Virus Res 101:109–118. https://doi.org/10.1016/j.virusres.2003.12.027
Ravikumar G, Raje Urs S, Vijaya Prakash NB, Rao CG, Vardhana KV (2011) Development of a multiplex polymerase chain reaction for the simultaneous detection of microsporidians, nucleopolyhedrovirus, and densovirus infecting silkworms. J Invertebr Pathol 107:193–197. https://doi.org/10.1016/j.jip.2011.04.009
Shen XX, Qiu FZ, Shen LP, Yan TF, Zhao MC, Qi JJ, Chen C, Zhao L, Wang L, Feng ZS, Ma XJ (2019) A rapid and sensitive recombinase aided amplification assay to detect hepatitis B virus without DNA extraction. BMC Infect Dis 19:229. https://doi.org/10.1186/s12879-019-3814-9
Singpanomchai N, Akeda Y, Tomono K, Tamaru A, Santanirand P, Ratthawongjirakul P (2019) Naked eye detection of the Mycobacterium tuberculosis complex by recombinase polymerase amplification-SYBR green I assays. J Clin Lab Anal 33:e22655. https://doi.org/10.1002/jcla.22655
Wang F, Liang Q, Lv R, Ahmad S, Bano M, Weng G, Wen R (2023) Optimization and validation of reverse transcription recombinase-aided amplification (RT-RAA) for Sorghum mosaic virus detection in sugarcane. Pathogens 12. https://doi.org/10.3390/pathogens12081055
Wang W, Wang C, Bai Y, Zhang P, Yao S, Liu J, Zhang T (2020a) Establishment of reverse transcription recombinase-aided amplification-lateral-flow dipstick and real-time fluorescence-based reverse transcription recombinase-aided amplification methods for detection of the Newcastle disease virus in chickens. Poult Sci 99:3393–3401. https://doi.org/10.1016/j.psj.2020.03.018
Wang W, Wang C, Zhang P, Yao S, Liu J, Zhai X, Zhang T (2020b) Reverse transcription recombinase-aided amplification assay combined with a lateral flow dipstick for detection of avian infectious bronchitis virus. Poult Sci 99:89–94. https://doi.org/10.3382/ps/pez559
Wang XY, Shao ZM, Zhang YJ, Vu TT, Wu YC, Xu JP, Deng MJ (2019) A1H NMR based study of hemolymph metabonomics in different resistant silkworms, Bombyx mori (Lepidotera), after BmNPV inoculation. J Insect Physiol 117:103911. https://doi.org/10.1016/j.jinsphys.2019.103911
Wu Q, Xu X, Chen Q, Zuo K, Zhou Y, Zhang Z, Kan Y, Yao L, Ji J, Bi Y, Xie Q (2019) Rapid and visible detection of Mycoplasma synoviae using a novel polymerase spiral reaction assay. Poult Sci 98:5355–5360. https://doi.org/10.3382/ps/pez356
Xiong Y, Luo Y, Li H, Wu W, Ruan X, Mu X (2020) Rapid visual detection of dengue virus by combining reverse transcription recombinase-aided amplification with lateral-flow dipstick assay. Int J Infect Dis 95:406–412. https://doi.org/10.1016/j.ijid.2020.03.075
Yan W, Shen Z, Tang X, Xu L, Li Q, Yue Y, Xiao S, Fu X (2014) Detection of Nosema bombycis by FTA cards and loop-mediated isothermal amplification (LAMP). Curr Microbiol 69:532–540. https://doi.org/10.1007/s00284-014-0619-3
Zhang P, Wang J, Lu Y, Hu Y, Xue R, Cao G, Gong C (2014) Resistance of transgenic silkworm to BmNPV could be improved by silencing ie-1 and lef-1 genes. Gene Ther 21:81–88. https://doi.org/10.1038/gt.2013.60
Zhang Y, Zhu F, Shao Y, Su Z, Ni J, Bai X (2021) Genomic sequence analysis of Bombyx mori nucleopolyhedrovirus isolated from Yunnan sericulture region, China. Indian J Microbiol 61:383–390. https://doi.org/10.1007/s12088-021-00947-1
Zhou Y, Wu J, Lin F, Chen N, Yuan S, Ding L, Gao L, Hang B (2015) Rapid detection of Bombyx mori nucleopolyhedrovirus (BmNPV) by loop-mediated isothermal amplification assay combined with a lateral flow dipstick method. Mol Cell Probes 29:389–395. https://doi.org/10.1016/j.mcp.2015.09.003
Acknowledgements
We are grateful to all who provided the means for us to access free software, which we have used and cited in this article. We would also like to thank all partners and laboratory staff for kindly help and criticism.
Funding
This work was funded by the China Agriculture Research System of MOF and MARA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Author information
Authors and Affiliations
Contributions
Runpeng Wang performed the main experiments and drafted the manuscript; Zhongyuan Shen were responsible for experimental design; Sheng Xu, Erjun Wei, and Ping He provided technical support and conducted data analysis. Yiling Zhang, Qiang Wang, and Xudong Tang revised the manuscript. All authors reviewed the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Wang, R., Xu, S., Wei, E. et al. Recombinase-aided amplification coupled with lateral flow dipstick for efficient and accurate detection of Bombyx mori nucleopolyhedrovirus. Folia Microbiol (2023). https://doi.org/10.1007/s12223-023-01102-7
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s12223-023-01102-7