Skip to main content
SpringerLink
Log in

Genomewide analysis of the chitinase gene family in Populus trichocarpa

  • Research Note
  • Published:
Journal of Genetics Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Figure 1
Figure 2

References

  • Cohen-Kupiec R. and Chet I. 1998 The molecular biology of chitin digestion. Curr. Opin. Biotech. 9, 270–277.

    Article  PubMed  CAS  Google Scholar 

  • Davis J. M., Clarke H. R. G., Bradshaw Jr H. D. and Gordon M. P. 1991 Populus chitinase genes: structure, organization, translated sequences to herbaceous plant chitinases. Plant Mol. Biol. 17, 631–639.

    Article  PubMed  CAS  Google Scholar 

  • Graham L. S. and Sticklen M. B. 1994 Plant chitinases. Canad. J. Bot. 72, 1057–1083.

    Article  CAS  Google Scholar 

  • Hamel F., Boivin R., Tremblay C. and Bellemare G. 1997 Structural and evolutionary relationships among chitinases of flowering plants. J. Mol. Evol. 44, 614–624.

    Article  PubMed  CAS  Google Scholar 

  • Jansson S. and Douglas C. J. 2007 Populus: a model system for plant biology. Annu. Rev. Plant Biol. 58, 435–458.

    Article  PubMed  CAS  Google Scholar 

  • Kalluri U. C., DiFazio S. P., Brunner A. M. and Tuskan G. A. 2007 Genomewide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol. 7, 59.

    Article  PubMed  Google Scholar 

  • Kumar S., Nei M., Dudley J. and Tamura K. 2008 Mega: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform. 9, 299–306.

    Article  PubMed  CAS  Google Scholar 

  • Leseberg C. H., Li A., Kang H., Duvall M. and Mao L. 2006 Genomewide analysis of the MADS-box gene family in Populus trichocarpa. Gene 378, 84–94.

    Article  PubMed  CAS  Google Scholar 

  • Lohmann G. V., Shimoda Y., Nielsen M. W., Jorgensen F. G., Grossmann C., Sandal N. et al. 2010 Evolution and regulation of the Lotus japonicus LysM receptor gene family. Mol. Plant Microbe Interact. 23, 510–521.

    Article  PubMed  CAS  Google Scholar 

  • Ohme-Takagi M., Meins Jr F. and Shinshi H. 1998 A tobacco gene encoding a novel basic class II chitinase: a putative ancestor of basic class I and acidic class II chitinase genes. Mol. Gen. Genet. 259, 511–515.

    Article  PubMed  CAS  Google Scholar 

  • Passarinho P. A. and de Vries S. C. 2002 Arabidopsis chitinases: a genomic survey. In The Arabidopsis Book, pp. 1–25. The American Society of Plant Bilogist, Rockville, USA.

    Google Scholar 

  • Rogozin I. B., Sverdlov A. V., Babenko V. N. and Koonin E. V. 2005 Analysis of evolution of exon-intron structure of eukaryotic genes. Brief Bioinform. 6, 118-134.

    Article  PubMed  CAS  Google Scholar 

  • Roldan Serrano A., Luna del Castillo J., Jorrin Novo J., Fernández Ocaña A. and Gómez Rodríguez M. 2007 Chitinase and peroxidase activities in sunflower hypocotyls: effects of BTH and inoculation with Plasmopara halstedii. Biol. Plant. 51, 149–152.

    Article  Google Scholar 

  • Santos P., Fortunato A., Ribeiro A. and Pawlowski K. 2008 Chitinases in root nodules. Plant Biotech. 25, 299–307.

    Article  CAS  Google Scholar 

  • Tuskan G. A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U. et al. 2006 The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596–1604.

    Article  PubMed  CAS  Google Scholar 

  • Xu F., Fan C. and He Y. 2007 Chitinases in Oryza sativa ssp. japonica and Arabidopsis thaliana. J. Genet. Genomics 34, 138–150.

    Article  PubMed  CAS  Google Scholar 

  • Zhuang J., Cai B., Peng R. H., Zhu B., Jin X. F., Xue Y. et al. 2008 Genomewide analysis of the AP2/ERF gene family in Populus trichocarpa. Biochem. Biophy. Res. Commun. 371, 468–474.

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This research was supported by the Doctorate Fellowship Foundation of Nanjing Forestry University, the Graduate Research Innovation Project of Jiangsu Province, China and the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD).

Author information

Authors and Affiliations

  1. Jiangsu Key Laboratory for Poplar Germplasm Enhancement and Variety Improvement, Nanjing Forestry University, Nanjing, 210037, People’s Republic of China

    CONG JIANG, RUI FANG HUANG, JIA LIANG SONG, MIN REN HUANG & LI AN XU

Authors
  1. CONG JIANG
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. RUI FANG HUANG
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. JIA LIANG SONG
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. MIN REN HUANG
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. LI AN XU
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to LI AN XU.

Additional information

Cong Jiang and Rui Fang Huang contributed equally to this work.

[Jiang C., Huang R. F., Song J. L., Huang M. R. and Xu L. A. 2013 Genomewide analysis of the chitinase gene family in Populus trichocarpa. J. Genet. 92, xx–xx]

Rights and permissions

Reprints and permissions

About this article

Cite this article

JIANG, C., HUANG, R.F., SONG, J.L. et al. Genomewide analysis of the chitinase gene family in Populus trichocarpa . J Genet 92, 121–125 (2013). https://doi.org/10.1007/s12041-013-0222-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12041-013-0222-6

Keywords

Search

Navigation