Skip to main content
Log in

Alternaria capsicicola sp. nov., a new species causing leaf spot of pepper (Capsicum annuum) in Malaysia

  • Original Article
  • Published:
Mycological Progress Aims and scope Submit manuscript

An Erratum to this article was published on 23 July 2015

Abstract

A new species of Alternaria causing leaf spot of pepper (Capsicum annuum) obtained from the Cameron highlands, Pahang, Malaysia, was determined based on phylogenetic analyses, morphological characteristics, and pathogenicity assays. Phylogenetic analyses of combined dataset of the glyceraldehyde-3-phosphate dehydrogenase (gpd), Alternaria allergen a 1 (Alt a1) and calmodulin genes revealed that the new isolates clustered into a subclade distinct from the closely related Alternaria species A. tomato and A. burnsii. The solitary or short chains of conidia resemble those of A. burnsii. However, conidia with long beaks are morphologically similar to A. tomato. Hence, the pathogenic fungus is proposed as Alternaria capsicicola sp. nov. Pathogenicity assays indicated that A. capsicicola causes leaf spot on pepper.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Berbee ML, Pirseyedi M, Hubbard S (1999) Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91:964–977

    Article  CAS  Google Scholar 

  • Bobev S (2009) Reference guide for the diseases of cultivated plants. Unknown journal or publisher

  • Bremer H (1945) On pod spots in peppers. Phytopathology 35:283–287

    Google Scholar 

  • Cho WD, Shin HD (2004) List of plant diseases in Korea (4th edn). Korean Society of Plant Pathology, Seoul, Republic of Korea

  • Chou HH, Wu WS (2002) Phylogenetic analysis of internal transcribed spacer regions of the genus Alternaria, and the significance of filament-beaked conidia. Mycol Res 106:164–169

    Article  CAS  Google Scholar 

  • de Hoog GS, Horre R (2002) Molecular taxonomy of the Alternaria and Ulocladium species from humans and their identification in the routine laboratory. Mycoses 45:259–276

    Article  PubMed  Google Scholar 

  • Farr DF, Rossman AY (2014) Fungal databases, systematic mycology and microbiology laboratory. ARS, USDA. Retrieved January 12, from http://nt.ars-grin.gov/fungaldatabases/

  • Gonzalez-Mendoza D, Argumedo-Delira R, Morales-Trejo A, Pulido-Herrera A, Cervantes-Diaz L, Grimaldo-Juarez O, Alarcon A (2010) A rapid method for isolation of total DNA from pathogenic filamentous plant fungi. Genet Mol Res 9:162–166

    Article  CAS  PubMed  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hong SG, Cramer RA, Lawrence CB, Pryor BM (2005) Alt a1 allergen homologs from Alternaria and related taxa: analysis of phylogenetic content and secondary structure. Fungal Genet Biol 42:119–129

    Article  CAS  PubMed  Google Scholar 

  • Kucharek T (1994) Alternaria diseases of crucifers. Florida Cooperative Extension Service, Fact sheet. University of Florida, Gainesville p 34

  • Lawrence DP, Park MS, Pryor BM (2012) Nimbya and Embellisia revisited, with nov. comb. for Alternaria celosiae and A. perpunctulata. Mycol Prog 11:799–815

    Article  Google Scholar 

  • Lawrence DP, Gannibal PB, Peever TL, Pryor BM (2013) The sections of Alternaria: formalizing species-groups concepts. Mycologia 105:530–546

    Article  PubMed  Google Scholar 

  • Lawrence DP, Gannibal PB, Dugan FM, Pryor BM (2014) Characterization of Alternaria isolates from the infectoria species-group and a new taxon from Arrhenatherum, Pseudoalternaria arrhenatheria sp. nov. Mycol Prog 13:257–276

    Article  Google Scholar 

  • Li Y, Zhang D, Xu W, Wu Z, Guo M, Cao A (2011) Alternaria tenuissima causing leaf spot and fruit rot on pepper (Capsicum annuum): first report in China. New Dis Rep 24:3

    Article  Google Scholar 

  • Mendes MAS, da Silva VL, Dianese JC, Ferreira MASV, Santos CEN, Gomez Neto E, Urben AF, Castro C (1998) Fungos em plants no Brasil. Embrapa-SPI/Embrapa-Cenargen, Brasilia, p 555

    Google Scholar 

  • Mondal KK, Rana SS, Sood P, Singh Y (2002) Kalazira: a new host for Alternaria burnsii. Indian Phytopathol 55:532

    Google Scholar 

  • Nees von Esenbeck CG (1816–1817) Das System der Pilze und Schwämme. Stahelsche, Würzburg

    Google Scholar 

  • Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala

    Google Scholar 

  • Peever TL, Su G, Carpenter-Boggs L, Timmer LW (2004) Molecular systematics of citrus-associated Alternaria species. Mycologia 96:119–134

    Article  CAS  PubMed  Google Scholar 

  • Pryor BM, Bigelow DM (2003) Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium. Mycologia 95:1141–1154

    Article  CAS  PubMed  Google Scholar 

  • Pryor BM, Gilbertson RL (2000) Molecular phylogenetic relationships amongst Alternaria species and related fungi based upon analysis of nuclear ITS and mtSSU rDNA sequences. Mycol Res 104:1312–1321

    Article  CAS  Google Scholar 

  • Pryor BM, Creamer R, Shoemaker RA, McLain-Romero J, Hambleton S (2009) Undifilum, a new genus of endophytic Embellisia oxytropis and Helminthosporium bornmuelleri on legumes. Botany 87:178–194

    Article  CAS  Google Scholar 

  • Rao VG (1969) The genus Alternaria - from India. Nova Hedwigia 17:219–258

    Google Scholar 

  • Richardson MJ (1990) An annotated list of seed-borne diseases, 4th edn. International Seed Testing Association, Zurich

    Google Scholar 

  • Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574

    Article  CAS  PubMed  Google Scholar 

  • Simmons EG (1992) Alternaria taxonomy: current status, viewpoint, challenge. In: Chelkowski J, Visconti A (eds) Alternaria: biology, plant diseases and metabolites. Elsevier, Amsterdam, pp 9–107

    Google Scholar 

  • Simmons EG (2007) Alternaria. An identification manual. CBS Biodivers Ser 6:1–775

    Google Scholar 

  • Simmons EG, Roberts RG (1993) Alternaria themes and variations (73). Mycotaxon 48:109–140

    Google Scholar 

  • Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (* and other methods), version 4.0b 10. Sinauer, Sunderland

    Google Scholar 

  • Tai FL (1979) Sylloge fungorum sinicorum. Science Press, Peking

  • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Uppal BN, Patel MK, Kamat MN (1938) Alternaria blight of cumin. Indian J Agric Sci 8:49–62

    CAS  Google Scholar 

  • Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Yu SH (2001) Korean species of Alternaria and Stemphylium. National Institute of Agricultural Science and Technology, Suwon

    Google Scholar 

  • Zhang TY (2003) Flora Fungorum Sinicorum. Vol. 16. Alternaria. Science Press, Beijing

  • Zhuang WY (ed) (2005) Fungi of northwestern China. Mycotaxon, Ithaca

Download references

Acknowledgments

We are grateful to the Malaysian Agricultural Research and Development Institute (MARDI) for collaboration in this study. We acknowledge laboratory assistants and coworkers in plant protection department of University Putra Malaysia (UPM) for valuable field trip arrangements and assistance during field samplings.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Abbas Nasehi or Jugah Bin Kadir.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Nasehi, A., Kadir, J.B., Abed Ashtiani, F. et al. Alternaria capsicicola sp. nov., a new species causing leaf spot of pepper (Capsicum annuum) in Malaysia. Mycol Progress 13, 991 (2014). https://doi.org/10.1007/s11557-014-0991-1

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s11557-014-0991-1

Keywords

Navigation