Abstract
The biosynthesis and signaling of plant hormones play a critical role in almost all biological processes. It is well-documented that phytohormones cross-talk with each other. Epigenetic mechanisms were suggested to regulate expression of downstream targets in hormone signaling pathways that help implement hormone functions. This new layer of complexities that integrate epigenetic information such as DNA methylation, chromatin remodeling, histone modification, microRNAs and siRNAs with plant hormone signaling and regulations of gene expression, has been gradually revealed. In this short review, the author tries to assemble recent progress to establish a molecular linkage between these two large and momentum research fields and also to help readers digest the literature.
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References
Wang Y, Li J. Genes controlling plant architecture. Curr Opin Biotechnol, 2006, 17: 123–129
Wang Y, Li J. Molecular basis of plant architecture. Annu Rev Plant Biol, 2008, 59: 253–279
Lin H, Wang R X, Qian Q, et al. DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Plant Cell, 2009, 21: 1512–1525
Jin J, Huang W, Gao J P, et al. Genetic control of rice plant architecture under domestication. Nat Genet, 2008, 40: 1365–1369
Dai Y, Wang H Z, Li B H, et al. Increased expression of MAP KINASE KINASE7 causes deficiency in polar auxin transport and leads to plant architectural abnormality in Arabidopsis. Plant Cell, 2006, 18: 308–320
Zhu Y, Nomura T, Xu Y, et al. ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice. Plant Cell, 2006, 18: 442–456
Mcsteen P, Zhao Y. Plant hormones and signaling: Common themes and new development. Dev Cell, 2008, 14: 467–473
Xue H, Chen X, Li G. Involvement of phospholipid signaling in plant growth and hormone effects. Curr Opin Plant Biol, 2007, 10: 483–489
Li G, Xue H W. Arabidopsis PLDζ2 regulates vesicle trafficking and is required for auxin response. Plant Cell, 2007, 19: 281–295
Huang X, Qian Q, Liu Z, et al. Natural variation at the DEP1 locus enhances grain yield in rice. Nat Genet, 2009, 41: 494–497
Shi Y H, Zhu S W, Mao X Z, et al. Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation. Plant Cell, 2006, 18: 651–664
Li H B, Qin Y M, Pang Y, et al. A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development. New Phytol, 2007, 175: 462–471
Qin Y M, Hu C Y, Pang Y, et al. Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. Plant Cell, 2007, 19: 3692–3704
Sun J Q, Xu Y X, Ye S Q, et al. Arabidopsis ASA1 is important for jasmonate-mediated regulation of auxin biosynthesis and transport during lateral root formation. Plant Cell, 2009, 21: 1495–1511
Kornberg R D, Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell, 1999, 98: 285–294
Jiang C, Pugh B F. Nucleosome positioning and gene regulation: Advances through genomics. Nat Rev Genet, 2009, 10: 161–172
Kwon C S, Wagner D. Unwinding chromatin for development and growth: A few genes at a time. Trends Genet, 2007, 23: 403–412
Saez A, Rodrigues A, Santiago J, et al. HAB1-SWI3B interaction reveals a link between abscisic acid signaling and putative SWI/SNF chromatin-remodeling complexes in Arabidopsis. Plant Cell, 2008, 20: 2972–2988
Han P, Li Q, Zhu Y X. Mutation of Arabidopsis BARD1 causes meristem defects by failing to confine WUSCHEL expression to the organizing center. Plant Cell, 2008, 20: 1482–1493
Leibfried A, To J P, Busch W, et al. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature, 2005, 438: 1172–1175
Berdasco M, Alcazar R, Garcia-Ortiz M V, et al. Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. PLoS ONE, 2008, 3: e3306
Kim J H, Woo H R, Kim J, et al. Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science, 2009, 323: 1053–1057
Perruc E, Kinoshita N, Lopez-Molina L. The role of chromatin-remodeling factor PKL in balancing osmotic stress responses during Arabidopsis seed germination. Plant J, 2007, 52: 927–936
Han P, Zhu Y X. BARD1 may be renamed ROW1 because it functions mainly as a REPRESSOR OF WUSCHEL1. Plant Signal Behav, 2009, 4: 52–54
Munshi A, Shafi G, Aliya N, et al. Histone modifications dictate specific biological readouts. J Genet Genomics, 2009, 36: 75–88
Dang W W, Steffen K K, Perry R, et al. Histone H4 lysine 16 acetylation regulates cellular lifespan. Nature, 2009, 459: 802–807
Kouzarides T. Chromatin modifications and their function. Cell, 2007, 128: 693–705
Yin H, Zhang X, Liu J, et al. Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis. Plant Cell, 2009, 21: 386–402
Zhou C, Zhang L, Duan J, et al. HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell, 2005, 17: 1196–1204
Murfett J, Wang X J, Hagen G, et al. Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression. Plant Cell, 2001, 13: 1047–1061
Aufsatz W, Mette M F, van der Winden J, et al. HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA. EMBO J, 2002, 21: 6832–6841
Sridha S, Wu K. Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis. Plant J, 2006, 46: 124–133
Zhu J, Jeong J C, Zhu Y, et al. Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proc Natl Acad Sci USA, 2008, 105: 4945–4950
Cao X, Jacobsen S E. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci USA, 2002, 99: 16491–16498
Xiao W, Custard K D, Brown R C, et al. DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell, 2006, 18: 805–814
Brady S M, Provart N J. Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell, 2009, 21: 1034–1051
Zhang X, Clarenz O, Cokus S, et al. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol, 2007, 5: e129
Lister R, O’Malley R C, Tonti-Filippini J, et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 2008, 133: 523–536
Chinnusamy V, Zhu J K. RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci, 2009, 52: 331–343
Zheng X, Pontes O, Zhu J, et al. ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature, 2008, 455: 1259–1262
Chuck G, Candela H, Hake S. Big impacts by small RNAs in plant development. Curr Opin Plant Biol, 2009, 12: 81–86
Ruiz-Ferrer V, Voinnet O. Roles of Plant Small RNAs in Biotic Stress Responses. Annu Rev Plant Biol, 2009, 60: 485–510
Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell, 2009, 136: 669–687
Wang J W, Wang L J, Mao Y B, et al. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell, 2005, 17: 2204–2216
Mao Y, Xue X, Chen X. Are small RNAs a big help to plants? Sci China C Life Sci, 2009, 52: 212–223
Ru P, Xu L, Ma H, et al. Plant fertility defects induced by the enhanced expression of microRNA167. Cell Res, 2006, 16: 457–465
Chinnusamy V, Zhu J K. Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol, 2009, 12: 133–139
Chan S W, Henderson I R, Zhang X, et al. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis. PLoS Genet, 2006, 2: e83
Yang J H, Seo H H, Han S J, et al. Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells. Nucleic Acids Res, 2008, 36: 1220–1226
Katiyar-Agarwal S, Morgan R, Dahlbeck D, et al. A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci USA, 2006, 103: 18002–18007
Schommer C, Palatnik J F, Aggarwal P, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol, 2008, 6: e230
Henderson I R, Jacobsen S E. Epigenetic inheritance in plants. Nature, 2007, 447: 418–424
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Zhu, Y. The epigenetic involvement in plant hormone signaling. Chin. Sci. Bull. 55, 2198–2203 (2010). https://doi.org/10.1007/s11434-010-3193-2
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DOI: https://doi.org/10.1007/s11434-010-3193-2