Abstract
The enrichment of heavy metals in the soil–rice system is affected by various factors, which hampers the prediction of heavy metal concentrations. In this research, a prediction model (CNN-HM) of heavy metal concentrations in rice was constructed based on convolutional neural network (CNN) technology and 17 environmental factors. For comparison, other machine learning models, such as multiple linear regression, Bayesian ridge regression, support vector machine, and backpropagation neural networks, were applied. Furthermore, the LH-OAT method was used to evaluate the sensitivity of CNN-HM to each environmental factor. The results showed that the R2 values of CNN-HM for Cd, Pb, Cr, As, and Hg were 0.818, 0.709, 0.688, 0.462, and 0.816, respectively, and both the MAE and RMAE values were acceptable. The sensitivity analysis showed that the concentrations of Cd and Pb, mechanical composition, soil pH, and altitude were the main sensitive features for CNN-HM. Compared with CNN-HM based on all input features, the performance of the quick prediction model that was based on the sensitive features did not degrade significantly, thereby indicating that CNN-HM has stronger stability and robustness. The quick prediction model has extensive application value for timely prediction of the enrichment of heavy metals in emergencies. This study demonstrated the effectiveness and practicability of CNNs in predicting heavy metal enrichment in the soil–rice system and provided a new perspective and solution for heavy metal prediction.
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Data Availability
The data that support the findings of this study are available from “Risk assessment Laboratory for Environmental Factors of Agro-product Quality Safety, Ministry of Agriculture and villages (Changsha)”, but restrictions apply to the availability of these data. The data were used under license for the current study, so they are not publicly available. However, data are available from the authors upon reasonable request and with permission of “Risk assessment Laboratory for Environmental Factors of Agro-product Quality Safety, Ministry of Agriculture and villages (Changsha)”.
References
Ahmed KM, Bhattacharya P, Hasan MA, Akhter SH, Alam SMM, Bhuyian MAH, Imam MB, Khan AA, Ondra S (2004) Arsenic enrichment in groundwater of alluvial aquifers in Bangladesh: an overview. Appl Geochem 19:181–200
Boshoff M, Jonge MD, Scheifler R, Bervoets L (2014) Predicting As, Cd, Cu, Pb and Zn levels in grasses (Agrostis sp. and Poa sp.) and stinging nettle (Urtica dioica) applying soil-plant transfer models. Sci Total Environ 493:862–871
Cai LM, Xu ZC, Ren MZ, Guo QW, Hu XB, Hu GC, Wan HF, Peng PG (2012) Source identification of eight hazardous heavy metals in agricultural soils of Huizhou, Guangdong Province, China. Ecotox Environ Safe 78:2–8
Cao WQ, Zhang C (2020) A collaborative compound neural network model for soil heavy metal content prediction. IEEE Access 8:129497–129509
Carey AM, Scheckel KG, Lombi E, Newville M, Choi Y, Norton GJ, Charnock JM, Feldmann J, Price AH, Meharg AA (2010) Grain unloading of arsenic species in rice. Plant Physiol 152:309–319
Castillo LJL, Galindo JAM, Rosal JEC (2019) A supervised learning approach on rice variety classification using convolutional neural networks. International Conference on Bioinformatics Research and Applications (ICBRA 2019). https://doi.org/10.1145/3383783.3383788
Cetin M, Onac AK, Sevik H, Sen B (2018) Temporal and regional change of some air pollution parameters in Bursa. Air Qual Atmos Hlth. https://doi.org/10.1007/s11869-018-00657-6
Cetin M, Sevik H, Cobanoglu O (2020) Ca, Cu, and Li in washed and unwashed specimens of needles, bark, and branches of the blue spruce (Picea pungens) in the city of Ankara. Environ Sci Pollut Res. https://doi.org/10.1007/s11356-020-08687-3
Chen HY, Yuan XY, Li TY, Hu S, Ji JF, Wang C (2016) Characteristics of heavy metal transfer and their influencing factors in different soil-crop systems of the industrialization region, China. Ecotox Environ Safe 126:193–201
Christou A, Eliadou E, Michael C, Hapeshi E, Kassions DF (2014) Assessment of long-term wastewater irrigation impacts on the soil geochemical properties and the bioaccumulation of heavy metals to the agricultural products. Environ Monit Assess 186:4857–4870
Deng Y, Jiang LH, Xu LF, Hao XD, Zhang SY, Ml Xu, Zhu P, Fu SD, Yl L, Yin HQ, Liu XD, Bai LY, Jiang HD, Liu HW (2019) Spatial distribution and risk assessment of heavy metals in contaminated paddy fields - A case study in Xiangtan City, southern China. Ecotox Environ Safe 171:281–289
Egbueri JC, Unigwe CO (2020) Understanding the extent of heavy metal pollution in drinking water supplies from Umunya, Nigeria: an indexical and statistical assessment. Anal Lett. https://doi.org/10.1080/00032719.2020.1731521
Egbueri JC, Ukah BU, Ubido OE, Unigwe CO (2020) A chemometric approach to source apportionment, ecological and health risk assessment of heavy metals in industrial soils from southwestern Nigeria. Int J Environ an Ch. https://doi.org/10.1080/03067319.2020.1769615
Fakhri Y, Khaneghah AM, Conti GO, Ferrante M, Khezri A, Darvishi A, Ahmadi M, Hasanzadeh V, Rahimizadeh A, Keramati H, Moradi B, Amanidaz N (2018) Probabilistic risk assessment (Monte Carlo simulation method) of Pb and Cd in the onion bulb (Allium cepa) and soil of Iran. Environ Sci Pollut Res 25:30894–30906
Friedlova M (2010) The influence of heavy metals on soil biological and chemical properties. Soil Water Res 5:21–27
Gianola D (2013) Priors in whole-genome regression: The Bayesian alphabet returns. Genetics 194:573–596
Guo B, Hong CL, Tong WB, Xu MX, Huang CL, Yin HQ, Lin YC, Fu QL (2020) Health risk assessment of heavy metal pollution in a soil-rice system: a case study in the Jin-Qu basin of China. Sci Rep-UK 10:11490
Gustafsson JP, Pechova P, Berggren D (2003) Modeling metal binding to soils: The role of natural organic matter. Environ Sci Technol 37:2767–2774
Hao H, Yu F, Li Q (2021) Soil temperature prediction using convolutional neural network based on ensemble empirical mode decomposition. IEEE Access 9:4084–4096
Hou D, OConnor D, Nathanail P, Tian L, Ma Y (2017) Integrated GIS and multivariate statistical analysis for regional scale assessment of heavy metal soil contamination: a critical review. Environ Pollut 231:1188–1200
Hough RL, Young SD, Crout NMJ (2010) Modelling of Cd, Cu, Ni, Pb and Zn uptake, by winter wheat and forage maize, from a sewage disposal farm. Soil Use Manage 19:19–27
Hu BF, Xue J, Zhou Y, Shao S, Fu ZY, Li Y, Chen SC, Qi L, Shi Z (2020) Modelling bioaccumulation of heavy metals in soil-crop ecosystems and identifying its controlling factors using machine learning. Environ Pollut 262:114308
Huang JY, Xu J, Xia Z, Liu LQ, Zhang YB, Li J, Lan GD, Qi YK, Kamon MS, Sun XM, Li Y (2015) Identification of influential parameters through sensitivity analysis of the TOUGH+ Hydrate model using LH-OAT sampling. Mar Petrol Geol 65:141–156
Jia XL, Fu TT, Hu BF, Shi Z, Zhou LQ, Zhu YW (2020) Identification of the potential risk areas for soil heavy metal pollution based on the source-sink theory. J Hazard Mater 393:122424
Khan A, Khan S, Khan MA, Qamar Z, Waqas M (2015) The uptake and bioaccumulation of heavy metals by food plants, their effects on plants nutrients, and associated health risk: a review. Environ Sci Pollut Res 22:13772–13799
Kittinun A, Suchakree S, Parintorn P, Worapan K (2020) Localization and classification of rice-grain images using region proposals-based convolutional neural network. Int J Autom Comput. https://doi.org/10.1007/s11633-019-1207-6
Kuang B, Mouazen AM (2011) Calibration of visible and near infrared spectroscopy for soil analysis at the field scale on three European farms. Eur J Soil Sci 62:629–636
Li YB, Fang FM, Wu MH, Kuang Y, Wu HJ (2017) Heavy metal contamination and health risk assessment in soil-rice system near Xinqiao mine in Tongling city, Anhui province, China. Hum Ecol Risk Assess 24:743–753
Li PF, Hua P, Gui DW, Niu J, Pei P, Zhang J, Krebs P (2020) A comparative analysis of artificial neural networks and wavelet hybrid approaches to long-term toxic heavy metal prediction. Sci Rep-UK 10:13439
Liang M, Hu XL (2015) Recurrent convolutional neural network for object recognition. IEEE Conference on Computer Vision & Pattern Recognition (CVPR 2015). https://doi.org/10.1109/CVPR.2015.7298958
Liu BL, Ma XW, Ai SW, Zhu SY, Zhang WY, Zhang YM (2016) Spatial distribution and source identification of heavy metals in soils under different land uses in a sewage irrigation region, northwest China. J Soils Sediment 16:1–10
Lomax C, Liu WJ, Wu L, Xue K, Xiong J, Zhou J, McGrath SP, Meharg AA, Miller AJ, Zhao FJ (2012) Methylated arsenic species in plants originate from soil microorganisms. New Phytol 193:665–672
Lu A, Wang J, Qin X, Wang K, Han P, Zhang S (2012) Multivariate and geostatistical analyses of the spatial distribution and origin of heavy metals in the agricultural soils in Shunyi, Beijing, China. Sci Total Environ 425:66–74
Lu H, Li HM, Liu T, Fan YF, Yuan Y, Xie MX, Qian X (2019) Simulating heavy metal concentrations in an aquatic environment using artificial intelligence models and physicochemical indexes. Sci Total Environ 694:133591
MacKay DJC (1992) Bayesian interpolation. Neural Comput 4:415–447
Ministry of Ecology and Environment of PRC (MEEPRC) (2016) Soil and sediment-Determination of aqua regia extracts of 12 metal elements-Inductively coupled plasma mass spectrometry (HJ 803–2016). (in Chinese)
Ministry of Ecology and Environmental of PRC (MEEPRC) (2018) Soil environmental quality risk control standard for soil contamination of agricultural land (GB 15618–2018). (in Chinese)
Mique EL, Palaoag TD (2018) Rice pest and disease detection using convolutional neural network. International Conference on Information Science and System (ICISS 2018). https://doi.org/10.1145/3209914.3209945
Mostafa SM, Eladimy AS, Hamad S, Amano H (2020) CBRL and CBRC: Novel algorithms for improving missing value imputation accuracy based on Bayesian ridge regression. Symmetry. https://doi.org/10.3390/sym12101594
National Health Commission of PRC (NHCPRC) (2016) National standard for food safety-determination of multiple elements in food (GB 5009.268–2016). (in Chinese)
National Health Commission of PRC (NHCPRC) (2017) National standard for food safety-limit of contaminants in food (GB 2762–2017). (in Chinese)
National Soil and Fertilizer Station, Ministry of Agriculture of PRC (NSFSPRC) (1994) Technical specification for soil analysis. (in Chinese)
Pyo JC, Hong S, Kwon YS, Kim MS, Cho KH (2020) Estimation of heavy metals using deep neural network with visible and infrared spectroscopy of soil. Sci Total Environ 741:140162
Sainath TN, Kingsbury B, Saon G, Soltau H, Mohamed AR, Dahl G, Ramabhadran B (2015) Deep Convolutional Neural Networks for large-scale speech tasks. Neural Netw 64:39–48
Saqib M (2020) Forecasting COVID-19 outbreak progression using hybrid polynomial-Bayesian ridge regression model. Appl Intell 51:2703–2713
Sawut R, Kasim N, Maihemuti B, Li H, Abliz A, Abdujappar A, Kurban M (2018) Pollution characteristics and health risk assessment of heavy metals inthe vegetable bases of northwest China. Sci Total Environ 642:864–878
Sert EB, Turkmen M, Cetin M (2019) Heavy metal accumulation in rosemary leaves and stems exposed to traffic-related pollution near Adana-İskenderun Highway (Hatay, Turkey). Environ Monit Assess 191:553
Sethy PK, Barpanda NK, Rath AK, Behera SK (2020) Nitrogen deficiency prediction of rice crop based on convolutional neural network. J Amb Intel Hum Comp 11:5703–5711
Sevik H, Cetin M, Ozel HU, Ozel HB, Mossi MMM, Cetin IZ (2019) Determination of Pb and Mg accumulation in some of the landscape plants in shrub forms. Environ Sci Pollut Res. https://doi.org/10.1007/s11356-019-06895-0
Sevik H, Cetin M, Ozel HB, Ozel S, Cetin IZ (2020) Changes in heavy metal accumulation in some edible landscape plants depending on traffic density. Environ Monit Assess 192:78
Silva FAD, Viana AP, Correa CCG, Santos EA, Oliveira JAVSD, Andrade JDG, Ribeiro RM, Gloria LS (2021) Bayesian ridge regression shows the best fit for SSR markers in Psidium guajava among Bayesian models. Sci Rep-UK. https://doi.org/10.1038/s41598-021-93120-z
Solenkova NV, Newman JD, Berger JS, Thurston G, Hochman JS, Lamas GA (2014) Metal pollutants and cardiovascular disease: Mechanisms and consequences of exposure. Am Heart J 168:812–822
Tang L, Deng SH, Tan D, Long JM, Lei M (2019) Heavy metal distribution, translocation, and human health risk assessment in the soil-rice system around Dongting Lake area, China. Environ Sci Pollut Res 26:17655–17665
Temminghoff EJM, Van DZ, Sjoerd EATM, Haan FD (1997) Copper mobility in a copper contaminated sandy soil as affected by pH, solid and dissolved orgaic matter. Environ Sci Technol 21:1109–4115
Tian WC, Liao ZL, Zhang J (2017) An optimization of artificial neural network model for predicting chlorophyll dynamics. Ecol Model 364:42–52
Tsagkatakis G, Moghaddam M, Tsakalides P (2020) Multi-temporal convolutional neural networks for satellite-derived soil moisture observation enhancement. International Geoscience and Remote Sensing Symposium (IGARSS 2020). https://doi.org/10.1109/igarss39084.2020.9323790
Turkyilmaz A, Sevik H, Cetin M, Saleh EAA (2018) Changes in heavy metal accumulation depending on traffic density in some landscape plants. Pol J Environ Stud 27:2277–2284
Wang XL (2018, July 31). The overall planning of mineral resources in Xiangtan City, Hunan Province (2016–2020). Xiangtan Natural Resources and Planning Bureau. Retrieved November 2, 2021, from http://www.xiangtan.gov.cn/109/171/174/content_916285.html
Wang X, An S, Xu YQ, Hou HP, Chen FY, Yang YJ, Zhang SL, Liu R (2019) A back propagation neural network model optimized by mind evolutionary algorithm for estimating Cd, Cr, and Pb concentrations in soils using Vis-NIR diffuse reflectance pectroscopy. Appl Sci-Basel 10:51
Wang YY, Su Y, Lu SG (2020) Predicting accumulation of Cd in rice (Oryza sativa L.) and soil threshold concentration of Cd for rice safe production. Sci Total Environ 738:139805
Williams PN, Villada A, Deacon C, Raab A, Figuerola J, Green AJ, Feldmann J, Meharg AA (2007) Greatly enhanced arsenic shoot assimilation in rice leads to elevated grain levels compared to wheat and barley. Environ Sci Technol 41:6854–6859
Xie Y (2021, October 26). Overview of Xiangtan. Xiangtan Natural Resources and Planning Bureau. Retrieved November 5, 2021, from http://www.xiangtan.gov.cn/68/index.htm#page3
Xiong TT, Leveque T, Austruy A, Goix S, Schreck E, Dappe V, Sobanska S, Foucault Y, Dumat C (2014) Foliar uptake and metal(loid) bioaccessibility in vegetables exposed to particulate matter. Environ Geochem Hlth 36:897–909
Xiong TT, Leveque T, Shahid M, Foucault Y, Mombo S, Dumat C (2014) Lead and cadmium phytoavailability and human bioaccessibility for vegetables exposed to soil or atmospheric pollution by process ultrafine particles. J Environ Qual 43:1593–1600
Xiangtan City Statistics Bureau (XTCSB) (2021) Xiangtan City Statistical Yearbook in 2020. (in Chinese)
Yann LC, Yoshua B, Geoffrey HT (2015) Deep learning. Nature 521:436–444
Yaseen ZM (2021) An insight into machine learning models era in simulating soil, water bodies and adsorption heavy metals: Review, challenges and solutions. Chemosphere 277:130126
Ye X, Li HY, Ma YB, Wu L, Sun B (2014) The bioaccumulation of Cd in rice grains in paddy soils as affected and predicted by soil properties. J Soil Sediment 14:1407–1416
Yu FB, Wei CH, Deng P, Peng T, Hu XG (2021) Deep exploration of random forest model boosts the interpretability of machine learning studies of complicated immune responses and lung burden of nanoparticles. Sci Adv 7:4130
Zang F, Wang S, Nan Z, Ma J, Zhang Q, Chen Y, Li Y (2017) Accumulation, spatio-temporal distribution, and risk assessment of heavy metals in the soil-corn system around a polymetallic mining area from the Loess Plateau, Northwest China. Geoderma 305:188–196
Zeng F, Ali S, Zhang H, Ouyang YN, Qiu BY, Wu FB, Zhang GP (2011) The influence of pH and organic matter content in paddy soil on heavy metal availability and their uptake by rice plants. Environ Pollut 159:84–91
Zhang Q, Li Z, Zeng G, Li J, Fang Y, Yuan Q, Wang Y, Ye F (2009) Assessment of surface water quality using multivariate statistical techniques in red soil hilly region: a case study of Xiangjiang watershed, China. Environ Monit Assess 152:123–131
Zhao FJ, Ma Y, Zhu YG, Tang Z, McGrath SP (2014) Soil contamination in China: current status and mitigation strategies. Environ Sci Technol 49:750–759
Zhejiang Ecological and Environmental Remediation Technology Association of PRC (ZJEERTA) (2019) Technical guideline for risk assessment of soil contamination of agricultural land (T/EERT 001–2019). (in Chinese)
Zukowska J, Biziuk M (2008) Methodological evaluation of method for dietary heavy metal intake. J Food Sci 73:648–657
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The authors are extremely thankful to the anonymous reviewers that work in this paper.
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Part of this study was funded by the National Agricultural Product Quality and Safety Risk Assessment Project, China (GJFP201701201).
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Panpan Li was involved in the conceptualization, methodology, software, data processing and analysis, visualization, and paper writing. Huijuan Hao contributed to the conceptualization, methodology, data collection, paper writing and editing. Xiaoguang Mao was involved in the conceptualization and methodology. Jianjun Xu contributed to the software and data processing. Yuntao Lv contributed to the resources and supervision. Wanming Chen helped in the sample collection, laboratory experiment, and quality control. Dabing Ge was involved in the paper editing and English polishing. Zhuo Zhang contributed to the supervision, organization, and paper reviewing. All authors read and approved the final manuscript.
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Li, P., Hao, H., Mao, X. et al. Convolutional neural network-based applied research on the enrichment of heavy metals in the soil–rice system in China. Environ Sci Pollut Res 29, 53642–53655 (2022). https://doi.org/10.1007/s11356-022-19640-x
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DOI: https://doi.org/10.1007/s11356-022-19640-x