Skip to main content

Advertisement

Log in

Deriving field-based sediment quality guidelines from the relationship between species density and contaminant level using a novel nonparametric empirical Bayesian approach

  • Environmental Quality Benchmarks for Protecting Aquatic Ecosystems
  • Published:
Environmental Science and Pollution Research Aims and scope Submit manuscript

Abstract

This paper describes a novel statistical approach to derive ecologically relevant sediment quality guidelines (SQGs) from field data using a nonparametric empirical Bayesian method (NEBM). We made use of the Norwegian Oil Industrial Association database and extracted concurrently obtained data on species density and contaminant levels in sediment samples collected between 1996 and 2001. In brief, effect concentrations (ECs) of each installation (i.e., oil platform) at a given reduction in species density were firstly derived by fitting a logistic-type regression function to the relationship between the species density and the corresponding concentration of a chemical of concern. The estimated ECs were further improved by the NEBM which incorporated information from other installations. The distribution of these improved ECs from all installations was determined nonparametrically by the kernel method, and then used to determine the hazardous concentration (HC) which can be directly linked to the species loss (or the species being protected) in the sediment. This method also enables an accurate estimation of the lower confidence limit of the HC, even when the number of observations was small. To illustrate the effectiveness of this novel technique, barium, cadmium, chromium, copper, mercury, lead, tetrahydrocannabinol, and zinc were chosen as example contaminants. This novel approach can generate ecologically sound SQGs for environmental risk assessment and cost-effectiveness analysis in sediment remediation or mud disposal projects, since sediment quality is closely linked to species density.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Aldenberg T, Slob W (1993) Confidence limits for hazardous concentrations based on the logistically distributed NOEC data. Ecotoxicol Environ Safe 25:48–63

    Article  CAS  Google Scholar 

  • Bowman AW, Foster PJ (1993) Density based exploration of bivariate data. Stat Comput 3:171–177

    Article  Google Scholar 

  • Clemmer BA, Krutchkoff RG (1968) The use of empirical Bayes estimators in a linear regression model. Biometrika 55:525–534

    Article  Google Scholar 

  • Crane M, Kwok KWH, Wells C, Whitehouse P, Lui GCS (2007) Use of field data to support European water framework directive quality standards for dissolved metals. Environ SciTechnol 41:5014–5021

    Article  CAS  Google Scholar 

  • Fernholz LT (1997) Reducing the variance by smoothing. J Stat PlanInfer 57:29–38

    Article  Google Scholar 

  • Foggo A, Attrill MJ, Frost MT, Rowden AA (2003) Estimating marine species richness: An evaluation of six extrapolation techniques. Mar Ecol Prog Ser 248:15–26

    Article  Google Scholar 

  • Forbes VE, Calow P (2002) Species sensitivity distributions revisited: a critical appraisal. Hum Ecol Risk Assess 8:473–492

    Article  Google Scholar 

  • Forbes TL, Forbes VE (1993) A critique of the use of distribution based extrapolation models in ecotoxicology. Funct Ecol 7:249–254

    Article  Google Scholar 

  • Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4:379–391

    Article  Google Scholar 

  • Gray JS (2000) The measurement of marine species diversity, with an application to the benthic fauna of the Norwegian continental shelf. J Exp Mar Biol Ecol 250:23–49

    Article  Google Scholar 

  • Gray JS (2002) Species richness of marine soft sediments. Mar Ecol Prog Ser 244:285–297

    Article  Google Scholar 

  • Hanson ML, Solomon KR (2002) New technique for estimating thresholds of toxicity in ecological risk assessment. Environ Sci Technol 36:3257–3264

    Article  CAS  Google Scholar 

  • He F, Legendre P (2002) Species diversity patterns derived from species-area models. Ecology 83:1185–1198

    Google Scholar 

  • Hopkin SP (1993) Ecological implications of ‘95 % protection levels’ for metals in soil. Oikos 66:137–141

    Article  Google Scholar 

  • Kefford BJ, Palmer CG, Jooste S, Warne MSJ, Nugegoda D (2005) What is meant by “95 % of species”? An argument for the inclusion of rapid tolerance testing. Hum Ecol Risk Assess 11:1025–1046

    Article  Google Scholar 

  • Kwok KWH, Bjørgesæter A, Leung KMY, Lui GCS, Gray JS, Shin PKS, Lam PKS (2008) Deriving site-specific environments using field-based species sensitivity distributions. Environ Toxicol Chem 27:226–234

    Article  CAS  Google Scholar 

  • Lehmann EL (1999) Elements of large sample theory. Springer, New York

    Book  Google Scholar 

  • Leung KMY, Bjørgesæter A, Gray JS, Li WK, Lui CSG, Wang Y, Lam PKS (2005) Deriving sediment quality guidelines from field-based species sensitivity distribution. Environ Sci Technol 39:5148–5156

    Article  CAS  Google Scholar 

  • Maritz JS, Lwin T (1995) Empirical Bayes methods. Chapman & Hall, London

    Google Scholar 

  • Martz HF, Krutchkoff RG (1969) Empirical Bayes estimators in a multiple linear regression model. Biometrika 56:367–374

    Article  Google Scholar 

  • Polansky AM (2000) Stabilizing bootstrap-t confidence intervals for small samples. Can J Stat 28:501–516

    Article  Google Scholar 

  • Posthuma L, Suter GW II, Traas TP (2002) Species sensitivity distributions in ecotoxicology. Lewis Publishers, Boca Raton

    Google Scholar 

  • Silverman BW (1986) Density estimation for statistics and data analysis. Chapman & Hall, London

    Book  Google Scholar 

  • Simpson GG (1964) Species density of North American recent mammals. Syst Zool 13:57–73

    Article  Google Scholar 

  • Van Straalen NM (2002) Threshold models for species sensitivity distributions applied to aquatic risk assessment for zinc. Environ Toxicol Pharmacol 11:167–172

    Article  Google Scholar 

  • Wand MP, Jones MC (1995) Kernel smoothing. Chapman & Hall, London

    Book  Google Scholar 

  • Wheeler JR, Grist EPM, Leung KMY, Morritt D, Crane M (2002) Species sensitivity distributions: data and model choice. Mar Pollut Bull 45:192–202

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by a grant from the University Grants Committee of the Hong Kong Special Administrative Region, China (project no. AoE/P-04/04) to the Area of Excellence in Marine Environment Research and Innovative Technology (MERIT). This paper is dedicated to the late Professor John S. Gray for his excellent input and intellectual exchange in the early stage of this project. The authors also thank the Norwegian Oil Industry Association (OLF) for allowing us to use their sediment database.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kenneth M. Y. Leung.

Additional information

Responsible editor: Philippe Garrigues

Appendix: Derivation of Eq. (2)

Appendix: Derivation of Eq. (2)

At x = x BG, the species density at installation j, a LS,j , satisfies the following expression

$$ ln\frac{a_{\mathrm{LS},j}}{1-{a}_{\mathrm{LS},j}}={b}_{\mathrm{LS},j}+{c}_{\mathrm{LS},j}{x}_{\mathrm{BG}}, $$

which implies

$$ {a}_{\mathrm{LS},j}=\frac{1}{1+ exp\left(-{b}_{\mathrm{LS},j}-{c}_{\mathrm{LS},j}{x}_{\mathrm{BG}}\right)}. $$

Then, the natural logarithm of EC(γ)LS,j can be obtained by

$$ ln\frac{a_{\mathrm{LS},j}\left(1-\gamma \right)}{1-{a}_{\mathrm{LS},j}\left(1-\gamma \right)}={b}_{\mathrm{LS},j}+{c}_{\mathrm{LS},j} ln\left(\mathrm{EC}{\left(\gamma \right)}_{\mathrm{LS},j}\right). $$

Hence, we can have the following result

$$ ln\left(\mathrm{EC}{\left(\gamma \right)}_{\mathrm{LS},j}\right)=\frac{1}{c_{\mathrm{LS},j}}\left\{ ln\frac{a_{\mathrm{LS},j}\left(1-\gamma \right)}{1-{a}_{\mathrm{LS},j}\left(1-\gamma \right)}-{b}_{\mathrm{LS},j}\right\}. $$

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lui, G.C.S., Li, W.K., Bjørgesæter, A. et al. Deriving field-based sediment quality guidelines from the relationship between species density and contaminant level using a novel nonparametric empirical Bayesian approach. Environ Sci Pollut Res 21, 177–192 (2014). https://doi.org/10.1007/s11356-013-1889-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11356-013-1889-1

Keywords

Navigation