Skip to main content
Log in

Genome sequence of a novel mycovirus of Rhizoctonia solani, a plant pathogenic fungus

  • Published:
Virus Genes Aims and scope Submit manuscript

Abstract

Here we present the genome sequence of a novel dsRNA virus we designed as Rhizoctonia solani RNA virus HN008 (RsRV-HN008) from a filamentous fungus R. solani. Its genome (7596 nucleotides) contains two non-overlapping open reading frames (ORF1 and ORF2). ORF1 encoded a 128 kDa protein that showed no significant identity to any other virus sequence in the NCBI database. ORF2 encoded a protein with a molecular weight of 140 kDa and shared a low percentage of sequence identity to the RdRps of unclassified dsRNA viruses. Sequence analysis revealed that RsRV-HN008 may be a member of a novel unclassified family of mycoviruses.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  1. S.A. Ghabrial, N. Suzuki, Annu. Rev. Phytopathol. 47, 353 (2009)

    Article  CAS  PubMed  Google Scholar 

  2. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz, Virus taxonomy: classification and nomenclature of viruses: ninth report of the international committee on taxonomy of viruses (Elsevier, San Diego, 2011)

    Google Scholar 

  3. X. Yu, B. Li, Y. Fu, D.H. Jiang, S.A. Ghabrial, G.Q. Li, X. Yi, Proc. Natl. Acad. Sci. USA 107, 8387 (2010)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  4. M.N. Pearson, R.E. Beever, B. Boine, K. Arthur, Mol. Plant Pathol. 10, 115 (2009)

    Article  CAS  PubMed  Google Scholar 

  5. Z. Kozlakidis, N. Herrero, S. Ozkan, L. Kanhayuwa, A. Jamal, M.F. Bhatti, R.H. Coutts, Arch. Virol. 158, 267 (2013)

    Article  CAS  PubMed  Google Scholar 

  6. D.L. Nuss, Y. Koltin, Annu. Rev. Phytopathol. 28, 37 (1990)

    Article  CAS  PubMed  Google Scholar 

  7. D.L. Nuss, Nat. Rev. Microbiol. 3, 632 (2005)

    Article  CAS  PubMed  Google Scholar 

  8. B. Sneh, S. Jabaji-Hare, S. Neate, G. Dijst (eds.), Rhizoctonia species: taxonomy, molecular biology, ecology, pathology and disease control (Kluwer Academic Publishers, Boston, 1996)

    Google Scholar 

  9. N. Bharathan, H. Saso, L. Gudipati, S. Bharathan, K. Whited, Plant Pathol. 54, 196 (2005)

    Article  CAS  Google Scholar 

  10. J. Jian, D.K. Lakshman, S.M. Tavantzis, Mol. Plant-Microbe Interact. 10, 1002 (1997)

    Article  CAS  Google Scholar 

  11. H.L. Robinson, J.W. Deacon, Mycol. Res. 106, 12 (2002)

    Article  CAS  Google Scholar 

  12. L. Zheng, H. Liu, M. Zhang, X. Cao, E. Zhou, Arch. Virol. 158, 1609 (2013)

    Article  CAS  PubMed  Google Scholar 

  13. L. Zheng, M. Zhang, Q. Chen, M. Zhu, E. Zhou, Virology 456, 220 (2014)

    Article  PubMed  Google Scholar 

  14. S. Das, R.E. Falloon, A. Stewart, A.R. Pitman, Fungal Biol. 118, 924 (2014)

    Article  CAS  PubMed  Google Scholar 

  15. T.J. Morris, J.A. Dodds, Phytopathology 69, 854 (1979)

    Article  CAS  Google Scholar 

  16. J. Zhong, Q. Zhou, X.H. Lei, D. Chen, H.H. Shang, H.J. Zhu, Virus Genes 48, 570 (2014)

    Article  CAS  PubMed  Google Scholar 

  17. J. Zhong, J.Z. Zhu, X.H. Lei, D. Chen, H.J. Zhu, B.D. Gao, Virus Genes 48, 329 (2014)

    Article  CAS  PubMed  Google Scholar 

  18. M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, D.G. Higgins, Bioinformatics 23, 2947 (2007)

    Article  CAS  PubMed  Google Scholar 

  19. K. Tamura, G. Stecher, D. Peterson, A. Filipski, S. Kumar, Mol. Biol. Evol. 30, 2725 (2013)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  20. S. Chiba, L. Salaipeth, Y.H. Lin, A. Sasaki, S. Kanematsu, N. Suzuki, J. Virol. 83, 12801 (2009)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  21. H.K. Won, S.J. Park, D.K. Kim, M.J. Shin, N. Kim, S.H. Lee, H.S. Lee, J. Microbiol. 51, 118 (2013)

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This study is funded by the National Key Technology R&D Program of China (2012BAD15B04-1).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bi-Da Gao.

Additional information

Edited by Seung-Kook Choi.

Jie Zhong and Chuan-Yuan Chen have contributed equally to this work.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 181 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhong, J., Chen, CY. & Gao, BD. Genome sequence of a novel mycovirus of Rhizoctonia solani, a plant pathogenic fungus. Virus Genes 51, 167–170 (2015). https://doi.org/10.1007/s11262-015-1219-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11262-015-1219-4

Keywords

Navigation