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Analysis of complete genomes of isolates of the Wheat dwarf virus from new geographical locations and descriptions of their defective forms

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Abstract

Recently, the importance of the Geminiviruses infecting cereal crops has been appreciated, and they are now being studied in detail. Barley and wheat strains of Wheat dwarf virus are recorded in most European countries. Information on complete sequences of isolates from the United Kingdom, Spain, and Austria are reported here for the first time. Analysis revealed that their sequences are very stable. Recombination between strains was recorded only for the barley strain. We identified several defective forms of the barley strain from barley and wheat, which do not influence symptom expression. Sequences of barley isolates infecting wheat were obtained that did not differ from the isolates from barley. Based on specific features of the SIR of the barley strains, it is suggested that they are assigned to one of the two proposed new clusters, A1 or A2.

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References

  1. Stanley, D.M. Bisaro, R.W. Briddon, J.K. Brown, C.M. Fauquet, B.D. Harrison, E.P. Rybicki, D.C. Stenger, Virus Taxonomy, in VIII Report of the International Committee on Taxonomy of Viruses, ed. by L.A. Ball (Elsevier/Academic Press, London, 2005), pp. 301–326

    Google Scholar 

  2. W. Zhang, N.H. Olson, T.S. Baker, L. Faulkner, M. Agbandje-McKenna, M. Boulton, J.W. Davies, R. McKenna, Virology 279, 471–477 (2001)

    Article  CAS  PubMed  Google Scholar 

  3. B. Muhire, D.P. Martin, J.K. Brown, J. Navas-Castillo, E. Moriones, F.M. Zerbini, R. Rivera-Bustamante, V.G. Malathi, R.W. Briddon, A. Varsani, Arch. Virol. 158, 1411–1424 (2013)

    Article  CAS  PubMed  Google Scholar 

  4. P.S. Wyant, S. Strohmeier, B. Schäfer, B. Krenz, I.P. Assunção, G.S. de Andrade Lima, H. Jeske, Virology 427, 151–157 (2012)

    Article  CAS  PubMed  Google Scholar 

  5. J. Schubert, A. Habekuß, K. Kazmaier, H. Jeske, Virus Res. 127, 61–70 (2007)

    Article  CAS  PubMed  Google Scholar 

  6. A. Varsani, A.L. Monjane, L. Donaldson, S. Oluwafemi, I. Zinga, E.K. Komba, D. Plakoutene, N. Mandakombo, J. Mboukoulida, S. Semballa, R.W. Briddon, P.G. Markham, J.-M. Lett, P. Lefeuvre, E.D. Rybicki, D.P. Martin, Virology J. 6, 194 (2009). doi:10.1186/1743-422X-6-194

    Article  Google Scholar 

  7. D.P. Martin, D. Linderme, P. Lefeuvre, D.N. Shepherd, A. Varsani, Arch. Virol. 156, 1299–1303 (2011)

    Article  CAS  PubMed  Google Scholar 

  8. S. Kraberger, J.E. Thomas, A.D.W. Geering, A. Dayarama, D. Staintona, J. Hadfield, M. Walters, K.S. Parmenter, S. van Brunschot, D.A. Collingsa, D.P. Martin, A. Varsani, Virus Res. 169, 127–136 (2012)

    Article  CAS  PubMed  Google Scholar 

  9. J. Kumar, P. Sudhir, S.P. Singh, J. Kumar, A. Tuli, Arch. Virol. 157, 2031–2034 (2012)

    Article  CAS  PubMed  Google Scholar 

  10. J. Vacke, Biol Plant Praha 3, 228–233 (1961)

    Article  Google Scholar 

  11. S.W. MacDowell, H. MacDonald, W.D. Hamilton, R.H. Coutts, K.W. Buck, EMBO J. 4, 2173–2180 (1985)

    CAS  PubMed  Google Scholar 

  12. W. Huth, J. Plant Dis, Protect 107, 406–414 (2000)

    Google Scholar 

  13. A. Kvarnheden, M. Lindblad, K. Lindsten, J.P.T. Valkonen, Arch. Virol. 147, 205–216 (2002)

    Article  CAS  PubMed  Google Scholar 

  14. S. Mehner, B. Manurung, M. Grüntzig, A. Habekuß, W. Witsack, E. Fuchs, J. Plant Dis, Protect 110, 313–323 (2003)

    Google Scholar 

  15. R.G. Kapooria, J. Ndunguru, OEPP/EPPO Bulletin 34, 413–419 (2004)

    Article  Google Scholar 

  16. G. Köklü, Cereal Res Commun 32, 61–68 (2004)

    Google Scholar 

  17. J. Xie, X. Wang, Y. Liu, Y. Peng, G. Zhou, Plant Dis. 91, 111 (2007)

    Article  Google Scholar 

  18. J.K. Kundu, S. Gadiou, G. Cervena, Virus Genes 38, 468–474 (2009)

    Article  CAS  PubMed  Google Scholar 

  19. A.M. Ekzayez, S.G. Kumari, Plant Dis. 95, 76 (2011)

    Article  Google Scholar 

  20. I. Tobias, O. Shevchenko, B. Kiss, A. Bysov, H. Snihur, V. Polischuk, K. Salank, L. Palkovics, Pol. J. Microbiol. 60, 125–131 (2011)

    CAS  PubMed  Google Scholar 

  21. U. Commandeur, W. Huth, Z. Pflanzenkr, Pflanzensch 106, 550–552 (1999)

    Google Scholar 

  22. K. Lindsten, J. Vacke, Acta Phytopath. Entomol. Hungarica 26, 175–180 (1991)

    Google Scholar 

  23. G. Köklü, J.N.E. Ramsell, A. Kvarnheden, Virus Genes 34, 359–366 (2007)

    Article  PubMed  Google Scholar 

  24. J.N.E. Ramsell, M.I. Boulton, D.P. Martin, J.P.T. Valkonen, A. Kvarnheden, Plant Pathol. 58, 1161–1169 (2009)

    Article  CAS  Google Scholar 

  25. W.H. Schnippenkoetter, D.P. Martin, J.A. Willment, E.P. Rybicki, J. Gen. Virol. 82, 3081–3090 (2001)

    CAS  PubMed  Google Scholar 

  26. B.E. Owor, D.P. Martin, D.N. Shepherd, R. Edema, A.L. Monjane, E.P. Rybicki, J.A. Thomson, A. Varsani, J. Gen. Virol. 88, 3154–3165 (2007)

    Article  CAS  PubMed  Google Scholar 

  27. A. Varsani, D.N. Shepherd, D. Dent, A.L. Monjane, E.P. Rybicki, D.P. Martin, Virology J. 6, 36 (2009)

    Article  Google Scholar 

  28. E. van der Walt, E.P. Rybicki, A. Varsani, J.E. Polston, R. Billharz, L. Donaldson, A.L. Monjane, D.P. Martin, J. Gen. Virol. 90, 734–746 (2009)

    Article  PubMed  Google Scholar 

  29. J. Hadfield, D.P. Martin, D. Stainton, S. Kraberger, B.E. Owor, D.N. Shepherd, F. Lakay, P.G. Markham, R.S. Greber, R.W. Briddon, A. Varsani, Arch. Virol. 156, 335–341 (2011)

    Article  CAS  PubMed  Google Scholar 

  30. A. Habekuß, M. Oberforster, Inform 2, 7–10 (2012)

    Google Scholar 

  31. H. Huss, N.A. Gund, L. Seigner, A.M. Manschadi, Der Pflanzenarzt 1–2, 22–26 (2013)

    Google Scholar 

  32. M.A. Achon, L. Serrano, C. Ratti, C. Rubies-Autonell, Plant Dis. 90, 970 (2006)

    Article  Google Scholar 

  33. V. Matzeit, Universität Köln (1988) Diss. 139 S

  34. D.P. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre, Bioinformatics 26, 2462–2463 (2010)

    Article  CAS  PubMed  Google Scholar 

  35. J. Schubert, A. Habekuß, F. Rabenstein, Plant Protect. Sci. 38, 43–48 (2002)

    Google Scholar 

  36. C.G. Casado, G.J. Ortiz, E. Padron, S.J. Bean, R. McKenna, M. Agbandje-McKenna, M.I. Boulton, Virology 323, 164–171 (2004)

    Article  CAS  PubMed  Google Scholar 

  37. B.L. Patil, N. Dutt, R.W. Briddon, S.E. Bull, D. Rothenstein, B.K. Borah, I. Dasgupta, J. Stanley, H. Jeske, Virus Res. 124, 59–67 (2007)

    Article  CAS  PubMed  Google Scholar 

  38. B.L. Patil, I. Dasgupta, Crit. Rev. Plant Sci. 25, 47–64 (2006)

    Article  CAS  Google Scholar 

  39. S.A.A. Behjatnia, I.B. Dry, M.A. Rezaian, Arch. Virol. 152, 1127–1138 (2007)

    Article  CAS  PubMed  Google Scholar 

  40. H. MacDonald, R.H.A. Coutts, K.W. Buck, J. Gen. Virol. 69, 1339–1344 (1988)

    Article  CAS  Google Scholar 

  41. R.J. Hayes, H. MacDonald, R.H.A. Coutts, K.W. Buck, J. Gen. Virol. 69, 1345–1350 (1986)

    Article  Google Scholar 

Download references

Acknowledgments

Authors wish to thank Toni Dixon for correcting English, M. Nielitz for technical assistance, and F. Rabenstein for providing isolates and antibodies for virus detection.

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Authors and Affiliations

  1. Institute for Biosafety in Plant Biotechnology, Federal Research Institute for Cultivated Plants, Julius Kuehn Institute, Erwin-Baur-Straße 27, 06484, Quedlinburg, Germany

    Jörg Schubert

  2. Institute for Resistance Research and Stress Tolerance, Federal Research Institute for Cultivated Plants, Julius Kuehn Institute, Erwin-Baur-Straße 27, 06484, Quedlinburg, Germany

    Antje Habekuß

  3. Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd., Haidian District, Beijing, 100193, People’s Republic of China

    Beilei Wu & Xifeng Wang

  4. BTL Bio-Test Labor GmbH Sagerheide, Birkenallee 19, 18184, Thulendorf, Germany

    Thomas Thieme

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  1. Jörg Schubert
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Correspondence to Jörg Schubert.

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Schubert, J., Habekuß, A., Wu, B. et al. Analysis of complete genomes of isolates of the Wheat dwarf virus from new geographical locations and descriptions of their defective forms. Virus Genes 48, 133–139 (2014). https://doi.org/10.1007/s11262-013-0989-9

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  • DOI: https://doi.org/10.1007/s11262-013-0989-9

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