Abstract
Background and Aims
Gaining a better understanding of the legacy effects of logging and forest restoration on soil microbial communities could improve our ability to conserve biodiversity and promote ecosystem sustainability. Herein, we investigated how soil microbial community is linked to natural, restored, and planted forests and the legacies of historical forest.
Methods
Soil microbial biomass and composition were measured in four forest types (i.e., primary forest, once-clearcut forest, twice-logged forest, and plantation forest) and related to physico-chemical soil properties and forest community structure data by using analysis of covariance.
Results
Fungal, bacterial, and total microbial biomass measured by phospholipid fatty acid profiles were significantly lower in the two secondary forests and the plantation than in the primary forest. The conversion of vegetation and soil regimes due to forest logging altered microbial communities.
Conclusions
Our findings elucidate the correlation of plant communities and soil characteristics to soil microbial communities in the context of subtropical forest management. Naturally restored and planted forests may affect soil microorganisms largely by directly modifying the soil labile C and N fractions of organic matter.
Similar content being viewed by others
References
Aber JD, Ollinger SV, Driscoll CT (1997) Modeling nitrogen saturation in forest ecosystems in response to land use and atmospheric deposition. Ecol Model 101:61–78
Ballard TM (2000) Impacts of forest management on northern forest soils. Forest Ecol Manag 133:37–42
Bardgett RD, Wardle DA (2010) Aboveground – belowground linkages: biotic interactions, ecosystem processes, and global change. Oxford University Press, Oxford
Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68:1–13
Bossio DA, Scow KM (1998) Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns. Microbial Ecol 35:265–278
Bremer E, Ellert BH, Janzen HH (1995) Total and light-fraction carbon dynamics during four decades after cropping changes. Soil Sci Soc Am J 59:1398–1403
Carney KM, Matson PA (2006) The influence of tropical plant diversity and composition on soil microbial communities. Microbial Ecol 52:226–238
Chen CR, Xu ZH, Mathers NJ (2004) Soil carbon pools in adjacent natural and plantation forests of subtropical Australia. Soil Sci Soc Am J 68:282–291
Compton JE, Boone RD (2002) Soil nitrogen transformations and the role of light fraction organic matter in forest soils. Soil Biol Biochem 34:933–943
De Ruiter PC, Van Veen JA, Moore JC, Brussaard L, Hunt HW (1993) Calculation of nitrogen mineralization in soil food webs. Plant Soil 157:263–273
Eisenhauer N, Beßler H, Engels C, Gleixner G, Habekost M, Milcu A, Partsch S, Sabais ACW, Scherber C, Steinbeiss S, Weigelt A, Weisser WW, Scheu S (2010) Plant diversity effects on soil microorganisms support the singular hypothesis. Ecology 91:485–496
Eyre TJ, Butler DW, Kelly AL, Wang J (2010) Effects of forest management on structural features important for biodiversity in mixed-age hardwood forests in Australia’s subtropics. Forest Ecol Manag 259:534–546
Frostegård Å, Bååth E (1996) The use of phospholipids fatty acid to estimate bacterial and fungal biomass in soil. Biol Fert Soils 22:59–65
Gallardo A, Schlesinger WH (1992) Carbon and nitrogen limitations of soil microbial biomass in desert ecosystems. Biogeochemistry 18:1–17
Garten CT Jr, Post WM III, Hanson PJ, Cooper LW (1999) Forest soil carbon inventories and dynamics along an elevation gradient in the southern Appalachian Mountains. Biogeochemistry 45:115–145
Gaudinski JB, Trumbore SE, Davidson EA, Zheng S (2000) Soil carbon cycling in a temperate forest: radiocarbon-based estimates of residence times, sequestration rates and partitioning of fluxes. Biogeochemistry 51:33–69
Grayston SJ, Prescott CE (2005) Microbial communities in forest floors under four tree species in coastal British Columbia. Soil Biol Biochem 7:1157–1167
Grayston SJ, Wang SQ, Campbell CD, Edwards AC (1997) Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem 30:369–378
Grayston SJ, Griffith GS, Mawdsley JL, Campbell CD, Bardgett RD (2001) Accounting for variability in soil microbial communities of temperate upland grassland ecosystems. Soil Biol Biochem 33:533–551
Grogan DW, Cronan JE (1997) Cyclopropane ring formation in membrane lipids of bacteria. Microbiol Mol Biol R 61:429–441
Hall JS, Harris DJ, Medjibe V, Ashton PMS (2003) The effects of selective logging on forest structure and tree species composition in a Central African forest: implications for management of conservation areas. Forest Ecol Manag 183:249–264
Högberg MN, Högberg P, Myrold DD (2007) Is microbial community composition in boreal forest soils determined by pH, C-to-N ratio, the trees, or all three? Oecologia 150:590–601
Holden SR, Treseder KK (2013) A meta-analysis of soil microbial biomass responses to forest disturbances. Front Microbiol 4:573–580
Jandl R, Lindner M, Vesterdal L, Bauwens B, Baritz R, Hagedorn F, Johnson DW, Minkkinen K, Byrne KA (2007) How strongly can forest management influence soil carbon sequestration? Geoderma 137:253–268
Jesus ED, Marsh TL, Tiedje JM, Moreira FMS (2009) Changes in land use alter the structure of bacterial communities in Western Amazon soils. IMSE J 3:1004–1011
Jia Q (2011) The effects of human disturbance on species composition, structure and spatial distribution of subtropical evergreen broad – leaved forests. MSc dissertation. Zhejiang Normal University, China
Kalembasa SJ, Jenkinson DS (1973) A comparative study of titrimetric and gravimetric methods for determination of organic carbon in soil. J Sci Food Agric 24:1085–1090
Kataja-aho S, Fritze H, Haimi J (2011) Short-term responses of soil decomposer and plant communities to stump harvesting in boreal forests. Forest Ecol Manag 262:379–388
Kowalchuk GA, Buma DS, de Boer W, Klinkhamer PGL, van Veen JA (2002) Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Anto Leeuw 81:509–520
Lamb EG, Kennedy N, Siciliano SD (2011) Effects of plant species richness and evenness on soil microbial community diversity and function. Plant Soil 338:483–495
Legendre P, Mi X, Ren H, Ma K, Yu M, Sun IF, He F (2009) Partitioning beta diversity in a sub-tropical broad-leaved forest in China. Ecology 90:663–674
Madan R, Pankhurst C, Hawke B, Smith S (2002) Use of fatty acids for identification of AM fungi and estimation of the biomass of AM spores in soil. Soil Biol Biochem 34:125–128
Mazzei L, Sist P, Ruschel A, Putz FE, Marco P, Pena W, Ferreira JER (2010) Above-ground biomass dynamics after reduced-impact logging in the Eastern Amazon. Forest Ecol Manag 259:367–373
Naficy C, Sala A, Keeling EG, Graham J, DeLuca TH (2010) Interactive effects of historical logging and fire exclusion on ponderosa pine forest structure in the northern Rockies. Ecol Appl 20:1851–1864
Neff JC, Townsend AR, Gleixner G, Lehman SJ, Turnbull J, Bowman WD (2002) Variable effects of nitrogen additions on the stability and turnover of soil carbon. Nature 419:915–917
Nilsson MC, Wardle DA, DeLuca TH (2008) Belowground and aboveground consequences of interactions between live plant species mixtures and dead organic substrate mixtures. Oikos 117:439–449
Oksanen L, Kindt R, Legendre P, O’Hara B, Simpson GL, Solymos P, Henry M, Stevens H, Wagner H (2008) Vegan: community ecology package. R package Version 1.15-1.http://cran.r-project.org/ http://vegan.r-forge.r-project.org/
Orwin KH, Wardle DA (2005) Plant species composition effects on belowground properties and the resistance and resilience of the soil microflora to a drying disturbance. Plant Soil 278:205–221
Parton WJ, Ojima DS, Cole CV, Schimel DS (1994) A general model for organic matter dynamics: sensitivity to litter chemistry, texture and management. Quantitative model of soil forming processes. Soil Sci Soc Am J, Madison
Pinkart HC, Ringelberg DB, Piceno YM, Macnaughton SJ, White DC (2002) Biochemical approaches to biomass measurements and community structure analysis. In: Hurst CJ, Crawford RL, Knudsen GR, McInerney MJ, Stetzenbach LD (eds) Manual of environmental microbiology, 2nd edn. American Society for Microbiology Press, Washington
Putz FE, Blate GM, Redford KH, Fimbel R, Robinson J (2001) Tropical forest management and conservation of biodiversity: an overview. Conserv Biol:7–20
Quideau SA, Chadwick OA, Benesi A, Graham RC, Anderson MA (2001) A direct link between forest vegetation type and soil organic matter composition. Geoderma 104:41–60
Richards AE, Dalal RC, Schmidt S (2007) Soil carbon turnover and sequestration in native subtropical tree plantations. Soil Biol Biochem 39:2078–2090
Schnecker J, Wild B, Fuchslueger L, Richter A (2002) Afield method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids. Soil Biol Biochem 51:81–83
Souza AF, Cortez LSR, Longhi SJ (2012) Native forest management in subtropical South America: long-term effects of logging and multiple-use on forest structure and diversity. Biodivers Conserv 21:1953–1969
Sparling GP, Ross DJ (1993) Biochemical methods to estimate soil microbial biomass: current developments and applications. In: Mulongoy K, Merckx R (eds) Soil organic matter dynamics and sustainability of tropical agriculture. Wiley-Sayce, Leuven
Tilman D, Reich PB, Knops J, Wedin D, Mielke T, Lehman C (2001) Diversity and productivity in a long-term grassland experiment. Science 294:843–845
Trumbore SE (1993) Comparison of carbon dynamics in tropical and temperate soils using radiocarbon measurements. Global Biogeochem Cy 7:275–290
Usher MB (2006) The biology of soil: a community and ecosystem approach. Soil Use Manag 22:3
van der Heijden MGA, Bardgett RD, van Straalen NM (2008) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11:296–310
von Lützowa M, Kögel-Knabner I, Ekschmittb K, Flessa H, Guggenberger G, Matzner E, Marschner B (2007) SOM fractionation methods: Relevance to functional pools and to stabilization mechanisms. Soil Biol Biochem 39:2183–2207
Wagg C, Bender SF, Widmer F, van der Heijden MG (2014) Soil biodiversity and soil community composition determine ecosystem multifunctionality. Proc Natl Acad Sci U S A 111:5266–5270
Wall A, Hytönen J (2011) The long-term effects of logging residue removal on forest floor nutrient capital, foliar chemistry and growth of a Norway spruce stand. Biomass Bioenergy 35:3328–3334
Wardle DA, Bardgett RD, Klironomos JN, Setälä H, van der Putten WH, Wall DH (2004) Ecological linkages between aboveground and belowground biota. Science 304:1629–1633
Yang YS, Guo JF, Chen GS, Yin YF, Gao R, Lin CF (2009) Effects of forest conversion on soil labile organic carbon fractions and aggregate stability in subtropical China. Plant Soil 323:153–162
Yu MJ, Hu ZH, Ding BY, Fang T (2001) Forest vegetation types in Gutianshan Natural Reserve in Zhejiang. J Zhejiang Univ (Agric Life Sci) 27:375–380
Zak DR, Pregitzer KS, Curtis PS, Teeri JA, Fogel R, Randlett DL (1993) Elevated atmospheric CO2 and feedback between carbon and nitrogen cycles. Plant Soil 151:105–117
Zak DR, Ringelberg DB, Pregitzer KS, Randlett DL, White DC, Curtis PS (1996) Soil microbial communities beneath Populus grandidentata grown under elevated atmospheric CO2. Ecol Appl 6:257–262
Zak DR, Holmes WE, White DC, Peacock AD, Tilman D (2003) Plant diversity, soil microbial communities, and ecosystem function: are there any links? Ecology 84:2042–2052
Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35:275–294
Zogg GP, Zak DR, Ringelberg DB, White DC, MacDonald NW, Pregitzer KS (1997) Compositional and functional shifts in microbial communities due to soil warming. Soil Sci Soc Am J 61:475–481
Acknowledgments
We would like to extend our thanks to the National Natural Science Foundation of China (31270559), the State Key Laboratory of Vegetation and Environmental Change (LVEC), and the Ministry of Education Laboratory for Earth Surface Processes of Peking University for funding this study. We thank Dr. Dunmei Lin, Xingxing Man, and Dr. Bo Yang for their suggestions on data analysis. We gratefully acknowledge Dr. Yu Liang, Dr. Jihong Huang, and Dr. Jiangshan Lai for their valuable advice. We appreciate the language assistance provided by Dr. Jeremy Miller, Dr. G.F. (Ciska) Veen, and Dr. G.W Korthals. We also would like to thank the staff of the Gutianshan Research Station of Forest Biodiversity and Climate Change for their assistance in the experimental establishment and sampling.
Ethical statement
Permission to conduct this research and obtain soil samples for analysis was granted by the Gutianshan National Nature Reserve.
Author information
Authors and Affiliations
Corresponding authors
Additional information
Responsible Editor: Sven Marhan .
Electronic supplementary material
Below is the link to the electronic supplementary material.
Fig. S1
Monthly mean air temperature and precipitation from 1985 to 2010 in Gutianshan National Nature Reserve. (DOCX 140 kb)
Table S1
Geographical factors in primary forest (PF), once-clearcut forest (SF1), twice-logged forest (SF2), and plantation (PL) (mean ± standard error, n = 144). (DOCX 36 kb)
Rights and permissions
About this article
Cite this article
Song, P., Ren, H., Jia, Q. et al. Effects of historical logging on soil microbial communities in a subtropical forest in southern China. Plant Soil 397, 115–126 (2015). https://doi.org/10.1007/s11104-015-2553-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11104-015-2553-y