Skip to main content
Log in

Mapping yield-associated QTL in globe artichoke

  • Published:
Molecular Breeding Aims and scope Submit manuscript

Abstract

Globe artichoke (Cynara cardunculus var. scolymus), whose immature inflorescences (capitula) are consumed as a vegetable all over the world, contributes significantly to the agricultural economy of the Mediterranean basin. Here, we describe a QTL (quantitative trait loci) analysis aimed at elucidating the mode of inheritance of seven main and first-order capitulum traits. Mapping was carried out in an F1 population obtained by crossing a globe artichoke with a cultivated cardoon (C. cardunculus var. altilis). A total of 100 QTL associated with the seven capitulum traits were mapped to 23 chromosomal regions, scattered over 12 of the 17 linkage groups. Among these, 73 were expressed in both growing seasons, while the others were only detected in one season. Up to nine QTL per trait were identified, and major QTL, responsible for some 20 % of the phenotypic variation, were detected for capitulum length, diameter, shape index and fresh weight. The QTL for correlated traits frequently co-localized, most likely due to pleiotropy. This study represents the first report on yield traits QTL in globe artichoke. The QTL identified, along with linked markers, particularly those located in four hot-spot QTL regions are of practical interest for crop improvement based on marker-assisted breeding.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Acquadro A, Lanteri S, Scaglione D, Arens P, Vosman B, Portis E (2009) Genetic mapping and annotation of genomic microsatellites isolated from globe artichoke. Theor Appl Genet 118:1573–1587

    Article  CAS  PubMed  Google Scholar 

  • Angelini LG, Ceccarini L, Di Nasso NNO, Bonari E (2009) Long-term evaluation of biomass production and quality of two cardoon (Cynara cardunculus L.) cultivars for energy use. Biomass Bioenergy 33:810–816

    Article  CAS  Google Scholar 

  • Basnitzki J, Zohary D (1994) Breeding of seed planted artichoke. Plant Breed Rev 12:253–269

    Google Scholar 

  • Brown GR, Bassoni DL, Gill GP, Fontana JR, Wheeler NC, Megraw RA, Davis MF, Sewell MM, Tuskan GA, Neale DB (2003) Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.). III. QTL verification and candidate gene mapping. Genetics 164:1537–1546

    CAS  PubMed Central  PubMed  Google Scholar 

  • Carter AH, Garland-Campbell K, Kidwell KK (2011) Genetic mapping of quantitative trait loci associated with important agronomic traits in the spring wheat (Triticum aestivum L.) cross ‘Louise’ × ‘Penawawa’. Crop Sci 51:84–95

    Article  Google Scholar 

  • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971

    CAS  PubMed Central  PubMed  Google Scholar 

  • Crespel L, Chirollet M, Durel CE, Zhang D, Meynet J, Gudin S (2002) Mapping of qualitative and quantitative phenotypic traits in Rosa using AFLP markers. Theor Appl Genet 105:1207–1214

    Article  CAS  PubMed  Google Scholar 

  • Falconer D, Mackay T (1996) Introduction to quantitative genetics. Prentice Hall, Harlow

    Google Scholar 

  • Foury C (1967) Étude de la biologie florale de l’artichaut (Cynara scolymus L.); application à la sélection, 1ère partie: données sur la biologie florale. Ann Amélior Plantes 17:357–373

    Google Scholar 

  • Foury C (1987) Quelques aspects du dèvelopement de l’artichaut (Cynara scolymus L.) issu de semences; analyse plus particuliere de la floraison en conditions naturelles: University Orsay, Paris

  • Grattapaglia D, Bertolucci FL, Sederoff RR (1995) Genetic-mapping of QTLs controlling vegetative propagation in Eucalyptus-grandis and E-urophylla using a pseudo-testcross strategy and RAPD markers. Theor Appl Genet 90:933–947

    Article  CAS  PubMed  Google Scholar 

  • Hayashi T, Awata T (2004) Efficient method for analysis of QTL using F1 progenies in an outcrossing species. Genetica 122:173–183

    Article  CAS  PubMed  Google Scholar 

  • Holland JB (2006) Estimating genotypic correlations and their standard errors using multivariate restricted maximum likelihood estimation with SAS Proc MIXED. Crop Sci 46:642–654

    Article  Google Scholar 

  • Ierna A, Mauromicale G (2010) Cynara cardunculus L. genotypes as a crop for energy purposes in a Mediterranean environment. Biomass Bioenergy 34:754–760

    Article  Google Scholar 

  • Ierna A, Mauro RP, Mauromicale G (2012) Biomass, grain and energy yield in Cynara cardunculus L. as affected by fertilization, genotype and harvest time. Biomass Bioenergy 36:404–410

    Article  Google Scholar 

  • Jansen RC, Stam P (1994) High-resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447–1455

    CAS  PubMed Central  PubMed  Google Scholar 

  • Kiani SP, Maury P, Nouri L, Ykhlef N, Grieu P, Sarrafi A (2009) QTL analysis of yield-related traits in sunflower under different water treatments. Plant Breed 128:363–373

    Article  Google Scholar 

  • Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743–756

    CAS  PubMed Central  PubMed  Google Scholar 

  • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199

    CAS  PubMed Central  PubMed  Google Scholar 

  • Lanteri S, Ledda L, Di Leo I, Mameli MG, Portis E (2005) Molecular and morphological variation among and within populations of Cynara scolymus L. cv. ‘Spinoso sardo’. Acta Hortic 681:333–340

    CAS  Google Scholar 

  • Lanteri S, Acquadro A, Comino C, Mauro R, Mauromicale G, Portis E (2006) A first linkage map of globe artichoke (Cynara cardunculus var. scolymus L.) based on AFLP, S-SAP, M-AFLP and microsatellite markers. Theor Appl Genet 112:1532–1542

    Article  CAS  PubMed  Google Scholar 

  • Lanteri S, Portis E, Acquadro A, Mauro RP, Mauromicale G (2012) Morphology and SSR fingerprinting of newly developed Cynara cardunculus genotypes exploitable as ornamentals. Euphytica 184:311–321

    Article  CAS  Google Scholar 

  • Lombardo S, Pandino G, Mauro R, Mauromicale G (2009) Variation of phenolic content in globe artichoke in relation to biological, technical and environmental factors. Ital J Agron 4:181–189

    Google Scholar 

  • Lopez Anido F, Firpo I, Garcia S, Cointry E (1998) Estimation of genetic parameters for yield traits in globe artichoke (Cynara scolymus L.). Euphytica 103:61–66

    Article  Google Scholar 

  • Mauro R, Portis E, Acquadro A, Lombardo S, Mauromicale G, Lanteri S (2009) Genetic diversity of globe artichoke landraces from Sicilian small-holdings: implications for evolution and domestication of the species. Conserv Genet 10:431–440

    Article  Google Scholar 

  • Mauro R, Portis E, Lanteri S, Mauromicale G (2012) Genotypic and bio-agronomical characterization of an early Sicilian landraces of globe artichoke. Euphytica 186:357–366

    Article  CAS  Google Scholar 

  • Mauro R, Portis E, Lanteri S, Lo Monaco A, Mauromicale G (2014) Clonal selection in a globe artichoke landrace: characterization of superior germplasm to improve cultivation in Mediterranean environment. J Agric Sci. doi:10.1017/S0021859613000713

    Google Scholar 

  • Mauromicale G, Ierna A (2000) Characteristics of heads of seed-grown globe artichoke [Cynara cardunculus L var. scolymus (L.) Fiori] as affected by harvest period, sowing date and gibberellic acid. Agronomie 20:197–204

    Article  Google Scholar 

  • Mauromicale G, Morello N, Santoiemma G, Ierna A (2000) Nuove varietà per migliorare la cinaricoltura siciliana. Informatore Agrario 26:47–51

    Google Scholar 

  • Melchinger AE, Utz HF, Schon GC (2004) QTL analyses of complex traits with cross validation, bootstrapping and other biometric methods. Euphytica 137:1–11

    Article  CAS  Google Scholar 

  • Pandino G, Lombardo S, Mauro RP, Mauromicale G (2012) Variation in polyphenol profile and head morphology among clones of globe artichoke selected from a landrace. Sci Hortic 138:259–265

    Article  CAS  Google Scholar 

  • Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD (1988) Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335:721–726

    Article  CAS  PubMed  Google Scholar 

  • Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ (2003) QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theor Appl Genet 106:384–396

    CAS  PubMed  Google Scholar 

  • Pecaut P, Dumax de Vaulx R, Lof H (1983) Virus-free clones of globe artichoke (Cynara scolymus L.) obtained after in vitro propagation. Acta Hortic 131:303–309

    Google Scholar 

  • Portis E, Mauromicale G, Mauro R, Acquadro A, Scaglione D, Lanteri S (2009) Construction of a reference molecular linkage map of globe artichoke (Cynara cardunculus var. scolymus). Theor Appl Genet 120(1):59–70

    Article  CAS  PubMed  Google Scholar 

  • Portis E, Acquadro A, Longo A, Mauro R, Mauromicale G, Lanteri S (2010) Potentiality of Cynara cardunculus L. as energy crop. J Biotechnol 150:165–166

    Article  Google Scholar 

  • Portis E, Scaglione D, Acquadro A, Mauromicale G, Mauro R, Knapp S, Lanteri S (2012) Genetic mapping and identification of QTL for earliness in the globe artichoke/cultivated cardoon complex. BMC Res Notes 5:252

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • R Development Core Team (2006) R: a language and environment for statistical computing. http://www.R-project.org

  • Scaglione D, Acquadro A, Portis E, Taylor CA, Lanteri S, Knapp SJ (2009) Ontology and diversity of transcript-associated microsatellites mined from globe artichoke EST database. BMC Genom 10:454

    Article  Google Scholar 

  • Scaglione D, Lanteri S, Acquadro A, Lai Z, Knapp SJ, Rieseberg L, Portis E (2012a) Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa. Plant Biotechnol J 10:956–969

    Article  CAS  PubMed  Google Scholar 

  • Scaglione D, Acquadro A, Portis E, Tirone M, Knapp SL, Lanteri S (2012b) RAD tag sequencing as a source of SNP markers in Cynara cardunculus L. BMC Genom 13:3

    Article  CAS  Google Scholar 

  • Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066

    Article  CAS  PubMed  Google Scholar 

  • Van Ooijen JW (1992) Accuracy of mapping quantitative trait loci in autogamous species. Theor Appl Genet 84:803–811

    PubMed  Google Scholar 

  • Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2002) MapQTL 4.0: software for the calculation of QTL positions on genetic maps. Plant Research International, Wageningen

    Google Scholar 

  • Voorrips R (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93(1):77–78

    Article  CAS  PubMed  Google Scholar 

  • Zhang GR, Sebolt AM, Sooriyapathirana SS, Wang DC, Bink M, Olmstead JW, Iezzoni AF (2010) Fruit size QTL analysis of an F-1 population derived from a cross between a domesticated sweet cherry cultivar and a wild forest sweet cherry. Tree Genet Genom 6:25–36

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This research was supported by MIPAAF (Ministero delle Politiche Agricole, Alimentari e Forestali—Italy) through the CYNERGIA (“Costituzione e valutazione dell’adattabilità di genotipi di Cynara cardunculus per la produzione di biomassa e biodiesel in ambiente mediterraneo”) project.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sergio Lanteri.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 20 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Portis, E., Mauro, R.P., Barchi, L. et al. Mapping yield-associated QTL in globe artichoke. Mol Breeding 34, 615–630 (2014). https://doi.org/10.1007/s11032-014-0061-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11032-014-0061-z

Keywords

Navigation