Skip to main content

Advertisement

Log in

Conformational Change Near the Redox Center of Dihydrolipoamide Dehydrogenase Induced by NAD+ to Regulate the Enzyme Activity

  • ORIGINAL PAPER
  • Published:
Journal of Fluorescence Aims and scope Submit manuscript

Abstract

Dihydrolipoamide dehydrogenase (LipDH) transfers two electrons from dihydrolipoamide (DHL) to NAD+ mediated by FAD. Since this reaction is the final step of a series of catalytic reaction of pyruvate dehydrogenase multi-enzyme complex (PDC), LipDH is a key enzyme to maintain the fluent metabolic flow. We reported here the conformational change near the redox center of LipDH induced by NAD+ promoting the access of the DHL to FAD. The increase in the affinity of DHL to redox center was evidenced by the decrease in K M responding to the increase in the concentration of NAD+ in Lineweaver-Burk plots. The fluorescence intensity of FAD transiently reduced by the addition of DHL was not recovered but rather reduced by the binding of NAD+ with LipDH. The fluorescence decay lifetimes of FAD and Trp were prolonged in the presence of NAD+ to show that FAD would be free from the electron transfer from the neighboring Tyrs and the resonance energy transfer efficiency between Trp and FAD lowered. These results consistently reveal that the conformation near the FAD and the surroundings would be so rearranged by NAD+ to allow the easier access of DHL to the redox center of LipDH.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

Abbreviations

LipDH:

Dihydrolipoamide dehydrogenase

DHL:

Dihydrolipoamide

FAD:

Flavinadenine dinucleotide

NAD+ :

Nicotineamide-adenine dinucleotide

RET:

Resonance excitation energy transfer

References

  1. Hong YS, Kerr DS, Liu T-C, Lusk M, Powell BR, Patel MS (1997) Deficiency of dihydrolipoamide dehydrogenase due to two mutant alleles (E340K and G101del): analysis of a family and prenatal testing. Biochim Biophys Acta 1362(2–3):160–168

    Article  CAS  PubMed  Google Scholar 

  2. Robinson BH, Taylor J, Sherwood WG (1977) Deficiency of dihydrolipoyl dehydrogenase (a component of the pyruvate and α-ketoglutarate dehydrogenase complexes): a cause of congenital chronic lactic acidosis in infancy. Pediatr Res 11:1198–1202

    Article  CAS  PubMed  Google Scholar 

  3. Elpeleg ON, Saada AB, Shaag A, Glustein JZ, Ruitenbeek W, Tein I, Halevy J (1997) Lipoamide dehydrogenase deficiency: a new cause for recurrent myoglobinuria. Muscle Nerve 20(2):238–240

    Article  CAS  PubMed  Google Scholar 

  4. Berger I, Elpeleg ON, Saada A (1996) Lipoamide dehydrogenase activity in lymphocytes. Clin Chim Acta 256(2):197–201

    Article  CAS  PubMed  Google Scholar 

  5. Sakaguchi Y, Yoshino M, Aramaki S, Yoshida I, Yamashita F, Kuhara T, Matsumoto I, Hayashi T (1986) Dihydrolipoyl dehydrogenase deficiency: a therapeutic trial with branched-chain amino acid estriction. Eur J Pediatr 145(4):271–274

    Article  CAS  PubMed  Google Scholar 

  6. Lu HP, Xun L, Xie XS (1998) Single-molecule enzymatic dynamics. Science 282:1877–1882

    Article  CAS  PubMed  Google Scholar 

  7. van den Berg PAW, Feenstra KA, Mark AE, Berendsen HJC, Visser AJWG (2002) Dynamic conformations of flavin adenine dinucleotide: Simulated molecular dynamics of the flavin cofactor related to the time-resolved fluorescence characteristics. J Phys Chem B 106:8858–8869

    Article  Google Scholar 

  8. Liu T-C, Hong YS, Korotchkina LG, Vettakkorumakankav NN, Patel MS (1999) Site-directed mutagenesis of human dihydrolipoamide dehydrogenase: role of lysine-54 and glutamate-192 in stabilizing the thiolate-FAD intermediate. Protein Expr Purif 16:27–39

    Article  PubMed  Google Scholar 

  9. Mande SS, Sarfaty S, Allen MD, Perham RN, Hol WG (1996) Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 4:277–286

    Article  CAS  PubMed  Google Scholar 

  10. Williams CHJ (1992) Lipoamide dehydrogenase, glutathione reductase, thioredoxin reductase, and mercuric ion reductase-a family of flavoenzyme transhydrogenases. In: Müller F (ed) Chemistry and biochemistry of flavoenzymes, vol 3. CRC Press, Boca Raton, pp 121–211

    Google Scholar 

  11. Reed LJ, Koike M, Levitch ME, Leach FR (1958) Studies on the nature and reactions of protein-bound lipoic acid. J Biol Chem 232:143–158

    CAS  PubMed  Google Scholar 

  12. Willis KJ, Szabo AG (1989) Resolution of tyrosyl and tryptophyl fluorescence emission from subtilisins. Biochemistry 28(11):4902–4908

    Article  CAS  Google Scholar 

  13. Zuker M, Szabo AG, Bramall L, Krajcarski DT, Selinger B (1985) Delta function convolution method (DFCM) for fluorescence decay experiments. Rev Sci Instrum 56(1):14–22

    Article  CAS  Google Scholar 

  14. Nakashima H, Fukunaga Y, Ueno R, Nishimoto E (2014) Sugar binding effects on the enzymatic reaction and conformation near the active site of pokeweed antiviral protein revealed by fluorescence spectroscopy. J Fluoresc 24(3):951–958

    Article  CAS  PubMed  Google Scholar 

  15. van den Berg PAW, van Hoek A, Walentas CD, Perham RN, Visser AJWG (1998) Flavin fluorescence dynamics and photoinduced electron transfer in Escherichia coli glutathione reductase. Biophys J 74:2046–2058

    Article  PubMed Central  PubMed  Google Scholar 

  16. van den Berg PAW, van Hoek A, Visser AJWG (2004) Evidence for a novel mechanism of time-resolved flavin fluorescence depolarization in glutathione reductase. Biophys J 87(4):2577–2586

    Article  PubMed Central  PubMed  Google Scholar 

  17. Mattevi A, Obmolova G, Sokatch JR, Betzel C, Hol WGJ (1992) The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 Å resolution. Proteins Struct Funct Genet 13:336–351

    Article  CAS  PubMed  Google Scholar 

  18. D’Anna JA, Tollin G (1971) Protein fluorescence and solvent perturbation spectra as probes of flavin-protein interactions in the Shethna flavoprotein. Biochemistry 10:57–64

    Article  PubMed  Google Scholar 

  19. Nishimoto E, Aso Y, Koga T, Yamashita S (2006) Thermal unfolding process of dihydrolipoamide dehydrogenase Studied by fluorescence spectroscopy. J Biochem 140(3):349–357

    Article  CAS  PubMed  Google Scholar 

  20. Ghisla S, Massey V (1989) Mechanisms of flavoprotein-catalyzed reactions. Eur J Biochem 181(1):1–17

    Article  CAS  PubMed  Google Scholar 

  21. Yang H, Luo G, Karnchanaphanurach P, Louie T-M, Rech I, Cova S, Xun L, Xie XS (2003) Protein conformational dynamics probed by single-molecule electron transfer. Science 302:262–266

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Etsuko Nishimoto.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Fukamichi, T., Nishimoto, E. Conformational Change Near the Redox Center of Dihydrolipoamide Dehydrogenase Induced by NAD+ to Regulate the Enzyme Activity. J Fluoresc 25, 577–583 (2015). https://doi.org/10.1007/s10895-015-1537-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10895-015-1537-x

Keywords

Navigation