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Genetic, morphological and cyanogen content evaluation of a new collection of Caribbean Lima bean (Phaseolus lunatus L.) landraces

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Abstract

Lima bean is a species cultivated broadly in the Americas and has been cultivated in the Caribbean for at least 500 years. In order to determine the genetic structure and diversity of Lima bean from the Caribbean, 50 landraces from Haiti, the Dominican Republic and Puerto Rico were collected and analyzed using 24 SSR markers. All landraces in this Caribbean collection were found to be of Middle-American descent. The genetic diversity (HE) was highest in the landraces from Puerto Rico and lowest in Haitian landraces. The observed proportion of heterozygotes (HO) was higher in the Haitian landraces and lowest in Puerto Rican landraces. Unweighted pair-group method with arithmetic averaging analysis showed that the landraces clustered into 3 clusters with all Haitian landraces grouping in one cluster. We also assessed the agro-morphological characteristics of the collection as well as the content of cyanogenic glucoside, linamarin, in leaves and dry seeds. Lima bean, which is a model crop for indirect plant defenses against herbivory, also possess linamarin as a source of direct plant defense. Upon tissue damage, linamarin is converted to toxic hydrogen cyanide. In our collection 44.6 % of the landraces had average seed HCN content ≤200 ppm which is the permitted level for Lima bean seed in the US. Our results also identified the landraces in this collection which have high linamarin levels in the leaves while having low levels in the seeds. Such landraces have the desirable combination of traits and will be the focus of our future plans for agronomic trait improvement though breeding.

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References

  • Akpapunam MA (1985) Effects of blanching, soaking and cooking on HCN yields, nitrogen, ash and minerals of Lima bean (Phaseolus lunatus L.). J Food Sci 50:1191–11192

    Article  CAS  Google Scholar 

  • Allard RW (1954) Sources of root knot nematode resistance in Lima beans. Phytopathology 4:1–4

    Google Scholar 

  • Arimura GI, Ozawa R, Shimoda T, Nishioka T, Boland W et al (2000) Herbivore-induced volatiles elicit defense genes in Lima bean leaves. Nature 406:512–515

    Article  PubMed  CAS  Google Scholar 

  • Arimura GI, Ozawa R, Nishioka T, Boland W, Koch T et al (2002) Herbivore induced volatiles induce the emission of ethylene in neighboring Lima bean plants. Plant J 29:87–98

    Article  PubMed  CAS  Google Scholar 

  • Ballhorn DJ, Lieberei R, Ganzhorn JU (2005) Plant cyanogenesis of Phaseolus lunatus and its relevance for herbivore-plant interaction: the importance of quantitative data. J Chem Ecol 31:1445–1473

    Article  PubMed  CAS  Google Scholar 

  • Ballhorn DJ, Kautz S, Heil M, Hegeman AD (2009) Cyanogenesis of wild Lima bean (Phaseolus lunatus L.) is an efficient direct defence in nature. PLoS One 4:e5450. doi:10.1371/journal.pone.0005450

    Article  PubMed  Google Scholar 

  • Baudoin, JP (2006) Plant resources of tropical Africa 1. In: Brink M, Belay G (eds) Cereals and pulses. PROTA Foundation, Wageningen, Netherlands/Backhuys Publishers, Leiden, Netherlands/CTA, Wageningen, Netherlands, pp 141–146

  • Baudoin JP, Barthelemy JP, Ndungo V, Mergeai G (1990) Distribution of cyanide content in the Lima bean in relation with the intra specific classification and the seed coat pigmentation. Ann Rep Bean Improv Coop 33:126–127

    Google Scholar 

  • Baudoin JP, Barthelemy JP, Ndungo N (1991) Variability of cyanide contents in the primary and secondary gene pools of the Lima bean, Phaseolus lunatus L. Plant Genet Resour Newsl 85:5–9

    Google Scholar 

  • Choh Y, Kugimiya S, Takabayashi J (2006) Induced production of extrafloral nectar in intact Lima bean plants in response to volatiles from spider mite-infested conspecific plants as a possible indirect defence against spider mites. Oecologia 147:455–460

    Article  PubMed  Google Scholar 

  • Cox T, Murphy J, Rodgers D (1986) Changes in genetic diversity in the red winter wheat regions of the United States. Proc Nat Acad Sci 83:5583–5586

    Article  PubMed  CAS  Google Scholar 

  • Dellaporta S, Wood L, Hicks J (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21

    Article  CAS  Google Scholar 

  • Esquivel M, Castiñeiras L, Hammer K (1990) Origin, classification, variation and distribution of Lima bean (Phaseolus lunatus L.) in light of Cuban material. Euphytica 49:89–97

    Article  Google Scholar 

  • Gaitan-Solıs E, Duque M, Edwards K, Tohme J (2002) Microsatellite repeats in common bean (Phaseolus vulgaris): isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci 42:2128–2136

    Article  Google Scholar 

  • Gutiérrez Salgado A, Gepts P, Debouck D (1995) Evidence for two gene pools of the Lima bean, Phaseolus lunatus L., in the Americas. Genet Resour Crop Evol 42:15–28

    Article  Google Scholar 

  • Heil M (2008) Indirect defence via tritrophic interactions. New Phytol 178:41–61

    Article  PubMed  CAS  Google Scholar 

  • Helms DM, Matthews WC, Temple SR, Roberts RA (2004) Registration of ‘Cariblanco N’ Lima bean. Crop Sci 44:352–353

    Google Scholar 

  • International Board for Plant Genetic Resources (IBPGR) (1982) Lima bean descriptors. http://www.bioversityinternational.org/publications/Pdf/100.pdf

  • Martínez-Castillo J, Zizumbo-Villarreal D, Perales-Rivera H, Colunga-Garcíiamarin P (2004) Intraspecific diversity and morpho-phenological variation in Phaseolus lunatus L. from the Yucatan, Peninsula, Mexico. Econ Bot 58:354–380

    Article  Google Scholar 

  • Mohammadi S, Prasanna B (2003) Review & interpretation: analysis of genetic diversity in crop plants. Crop Sci 43:1235–1248

    Article  Google Scholar 

  • Montgomery RD (1969) Cyanogens. In: Liener IE (ed) Toxic constituents of plant foodstuffs. Academic Press, New York, pp 143–157

    Google Scholar 

  • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590

    PubMed  CAS  Google Scholar 

  • Nienhuis J, Tivang J, Skroch P, dos Santos J (1995) Genetic relationships among cultivars and landraces of lima bean (Phaseolus lunatus L.) as measured by RAPD markers. J Am Soc Hortic Sci 120:300–306

    Google Scholar 

  • Oetting W, Lee H, Flanders D, Wiesner G, Sellers T, King R (1995) Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13-tailed primers. Genomics 30:450–458

    Article  PubMed  CAS  Google Scholar 

  • Rohlf FJ (1993) NTSYS-PC numerical taxonomy and multivariate analysis system. Version 1.8 Exeter Publ., Setauket, NY

  • Schappert PJ, Shore JS (1999) Cyanogenesis, herbivory and plant defense in Turnera ulmifolia on Jamaica. Ecoscience 6:511–520

    Google Scholar 

  • Schertz KF, Jurgelsky W Jr, Boyd W (1960) Inheritance of anti-A1 hemagglutinating activity in Lima beans, Phaseolus lunatus. Proc Nat Acad Sci 46:529–532

    Article  PubMed  CAS  Google Scholar 

  • Smith J (1984) Genetic variability within U.S. hybrid maize: multivariate analysis of isozyme data. Crop Sci 24:1041–1046

    Article  CAS  Google Scholar 

  • Vekemans X, Lefebvre C (1997) On the evolution of heavy metal tolerant populations in Armenia maritima: evidence from allozyme variation and reproductive barriers. J Evol Biol 10:175–191

    Article  Google Scholar 

  • Viehoever A (1940) Edible and poisonous beans of the Lima bean type (Phaseolus lunatus L.): comparative study including other similar beans. Thail Sci Bull 2:1–99

    CAS  Google Scholar 

  • Zho Y, Bui T, Auckland L, Williams C (2002) Direct fluorescent primers are superior to M13-tailed primers for Pinus taeda microsatellites. Biotechniques 32:46–52

    Google Scholar 

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Acknowledgments

The authors thank Mr. Emmanuel Prophete and Mr. Gasner Demosthene of the Ministry of Agriculture and National Seed Service of the Ministry of Agriculture, Natural Resources and Rural Development (Haiti) and Mr. Julio Cesar Nin of the Instituto Dominicano de Investigaciones Agropecuarias y Forestales (Dominican Republic) for the collection of seed and passport data of the Lima bean landraces from Haiti and the Dominican Republic. We would also like to thank Dr. Tim Porch (USDA-ARS-TARS, Puerto Rico) for the critical review of the manuscript.

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Correspondence to Dimuth Siritunga.

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Montero-Rojas, M., Ortiz, M., Beaver, J.S. et al. Genetic, morphological and cyanogen content evaluation of a new collection of Caribbean Lima bean (Phaseolus lunatus L.) landraces. Genet Resour Crop Evol 60, 2241–2252 (2013). https://doi.org/10.1007/s10722-013-9989-9

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