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Ecological, morphological and genetic diversity in Oryza rufipogon Griff. (Poaceae) from Hainan Island, China

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An Erratum to this article was published on 09 March 2010

Abstract

In this study, ecological, morphological and genetic diversity in 11 surviving populations of Oryza rufipogon Griff. from Hainan Island, China were investigated. These data served to provide much needed data in support of conservation strategies. The results divided O. rufipogon into six ecotypes. The cluster analysis based on 19 morphological features showed clear differentiation among populations or within populations. The cluster analysis based on SSR also revealed similar results. The ecological, morphological and genetic diversity observed in O. rufipogon resulted in the following conservation recommendations: (1) the four currently protected O. rufipogon localities should be maintained, due to the different ecological communities represented at these sites; (2) some populations, such as HL (Hele county, Hainan Island), should be protected, but some populations, such as FC (Fucheng county, Hainan Island) and DL (Dalu county, Hainan Island), might not be protected. (3) An isolation zone should be established to avoid possible introgression between O. sativa L. and O. rufipogon; and human activities that impact O. rufipogon should be reduced or eliminated.

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References

  • Anderberg MR (1973) Cluster analysis for applications. Academic Press, New York

    Google Scholar 

  • Cai HW, Wang XK, Morishima H (2004) Comparison of population genetic structures of common wild rice (Oryza rufipogon Griff.), as revealed by analyses of quantitative traits, allozymes, and RFLPs. Heredity 92:409–417

    Article  CAS  PubMed  Google Scholar 

  • Chen CB, Pan DJ (2006) Wild rice germplasm resources described norms and standards for data. Chinese Agricultural Press, Beijing

    Google Scholar 

  • Chen CB, Pang HH (2001) Genetic diversity of Oryza rufipogon Griff. from Guangxi I: ecological system diversity of Oryza rufipogon Griff. J Plant Genet Resour 2:16–21

    Google Scholar 

  • Dong YB, Kong H, Peng YF et al (2008) Flowering and reproduction habits of Oryza rufipogon in Wanning city of Hainan province. J Plant Genet Resour 9:218–222

    Google Scholar 

  • Doyle J, Morgante M, Tingey S et al (1998) Size homoplasy in chloroplast microsatellites of wild perennial relatives of soybean. Mol Biol Evol 15:215–218

    CAS  PubMed  Google Scholar 

  • Elizabeth AV, Edson FS, Eliana AS et al (2008) Morphoagronomic genetic diversity in American wild rice. Braz Arch Biol Technol 51:95–104

    Google Scholar 

  • Everitt B (1980) Cluster analysis. Halsted Press, New York

    Google Scholar 

  • Frankham R (2003) Genetics and conservation biology in Comptes rendus. Biologies 326:22–29

    Article  Google Scholar 

  • Fu J (2000) Distant hybridization between wild rice and rice. Science and Technology Press, Hunan

    Google Scholar 

  • Gao LZ (2004) Population structure and conservation genetics of wild rice Oryza rufipogon (Poaceae) a region-wide perspective from microsatellite variation. Mol Ecol 13:1009–1024

    Article  CAS  PubMed  Google Scholar 

  • Gao LZ, Chen W, Jiang WZ et al (2000a) Genetic erosion in the Northern marginal population of the common wild rice Oryza rufipogon Griff. and its conservation, revealed by the change of population genetic structure. Heredity 133:47–53

    Article  CAS  Google Scholar 

  • Gao LZ, Hong DY, Ge S (2000b) Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff. in China. Theor Appl Genet 101:494–502

    Article  CAS  Google Scholar 

  • Gao LZ, Ge S, Hong DY (2000c) A preliminary study on ecological differentiation within the common wild rice Oryza rufipogon Griff. Acta Agron Sin 26:210–216

    Google Scholar 

  • Gao LZ, Ge S, Hong DY et al (2002a) Allozyme variation and conservation genetics of common wild rice (Oryza rufipogon Griff.) in Yunnan, China. Euphytica 124:273–281

    Article  CAS  Google Scholar 

  • Gao LZ, Schaal BA, Zhang CH et al (2002b) Assessment of population genetic structure in common wild rice Oryza rufipogon Griff. using microsatellite and allozyme markers. Theor Appl Genet 106:173–180

    CAS  PubMed  Google Scholar 

  • Hau B, Kranz J (1990) Mathematics and statistics for analysis in epidemiology. In: Kranz J (ed) Epidemics of plant diseases: mathematical analysis and modeling. Springer, Berlin, pp 12–52

    Google Scholar 

  • Hong DY (1995) Rescuing genetic resources of wild rice in China. Bull Chin Acad Sci l0:325–326

    Google Scholar 

  • Huang JG, Sheng JS (1991) Chinese rice resource directory (wild rice). Agricultural Press, Beijing

    Google Scholar 

  • Li Y, Yang X, Zhao F et al (2006) SSR markers on indica-japonica differentiation of natural population of Oryza rufipogon in Yuanjiang, Yunnan province. Chin J Rice Sci 20:137–140

    CAS  Google Scholar 

  • Lu BR, Fu Q, Shen ZC (2008) Commercialization of transgenic rice in China: potential environmental biosafety issues. Biodivers Sci 16:426–436

    CAS  Google Scholar 

  • Morishima H, Sano Y, Oka HI (1984) Differentiation of perennial and annual types due to habitat conditions in the wild rice Oryza perennis. Plant Syst Evol 144:119–135

    Article  Google Scholar 

  • National exploring group of wild rice (1984) Investigation of resources of wild rice in China. Acta Agron Sin 6:1–8

    Google Scholar 

  • Oka HI (1974) Experimental studies on the origin of cultivated rice. Genetics 974:475–486

    Google Scholar 

  • Oka HI (1988) Origin of cultivated rice. Japan Scientific Societies Press, Tokyo

    Google Scholar 

  • Oka HI, Chang WT (1961) Hybrid swarms between wild and cultivated rice species, Oryza perennis and O. sativa. Evolution 15:418–430

    Article  Google Scholar 

  • Pang HH, Chen CB (2002) Chinese wild rice resource. Guangxi Science and Technology Press, Guangxi

    Google Scholar 

  • Pang HH, Cai HW, Wang XK (1995) Morphological classification of common wild rice (Oryza rufipogon Griff.) in China. Acta Agron Sin 21:17–24

    Google Scholar 

  • Qian J, He TH, Song ZP et al (2005) Genetic evaluation of in situ conserved and reintroduced populations of wild rice Oryza rufipogon (Poaceae) in China. Biochem Genet 43:561–575

    Article  PubMed  Google Scholar 

  • Ren FG, Lu BR, Li SQ et al (2003) A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor Appl Genet 108:113–120

    Article  CAS  PubMed  Google Scholar 

  • Shane WW (1987) The use of principal component analysis and cluster analysis in crop loss assessment. In: Teng PS (ed) Crop loss assessment and pest management. APS Press, USA, pp 139–149

    Google Scholar 

  • Song ZP, Xu X, Wang B et al (2003) Genetic diversity in the northernmost Oryza rufipogon Griff. Populations estimated by SSR markers. Theor Appl Genet 107:1492–1499

    Article  CAS  PubMed  Google Scholar 

  • Song ZP, Zhu WY, Rong J (2006) Evidences of introgression from cultivated rice to Oryza rufipogon (Poaceae) populations based on SSR fingerprinting implications for wild rice differentiation and conservation. Evol Ecol 20:501–522

    Article  Google Scholar 

  • Sun CQ, Wang XK, Yoshimura A (2002) Genetic differentiation for nuclear, mitochondrial and chloroplast genomes in common wild rice (O. rufipogon Griff.) and cultivated rice (O. sativa L.). Theor Appl Genet 104:1335–1345

    Article  CAS  PubMed  Google Scholar 

  • Tan LB, Zhang PJ, Liu FX et al (2008) Quantitative trait loci underlying domestication- and yield-related traits in an Oryza sativa × Oryza rufipogon advanced backcross population. Genome 51:692–704

    Article  CAS  PubMed  Google Scholar 

  • Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066

    Article  CAS  PubMed  Google Scholar 

  • Vaughan DA, Chang TT (1992) In situ conservation of rice genetic resources. Econ Bot 46:368–383

    Google Scholar 

  • Wang J, Chen FP, Tu JC et al (2004) Cluster analysis of morphological traits of Gaozhou wild rice populations in Guangdong Province, China. J South China Agric Univ 25:63–66

    Google Scholar 

  • Wang MX, Zhang HL, Zhang DL et al (2008) Genetic structure of Oryza rufipogon Griff. in China. Heredity 101:527–535

    Article  CAS  PubMed  Google Scholar 

  • Wright SI, Gaut BS (2005) Molecular population genetics and the search for adaptive evolution in plants. Mol Biol Evol 22:506–519

    Article  CAS  PubMed  Google Scholar 

  • Xiao J, Grandillo S, Ahn SN et al (1996) Genes from wild rice improve yield. Nature 384:223–224

    Article  CAS  Google Scholar 

  • Xie ZW, Ge S, Hong DY (1999) Preparation of DNA from silica gel a dried mini-amount of leaves of Oryza rufipogon for RAPD study and total DNA bank construction. Acta Bot Sin 41:807–812

    CAS  Google Scholar 

  • Xie ZW, Lu YQ, Ge S et al (2001) Clonality in wild rice (Oryza rufipogon, Poaceae) and its implications for conservation management. Am J Bot 88:1058–1064

    Article  Google Scholar 

  • Yang QW, Chen CB, Zhang WX et al (2005) Minimum number of SSR alleles needed for genetic structure analysis of Oryza rufipogon populations. Chin J Rice Sci 19:297–302

    CAS  Google Scholar 

  • Zhou HF, Xie ZW, Ge S (2003) Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff.) in China. Theor Appl Genet 107:332–339

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

We appreciate the support of the National basic research program of China (2007CB109202) and the National Special Program of Transgenic Research (2008ZX08011-001). We thank Crop Science Research Institute in CAAS and Guangdong Academy of Agricultual Sciences for providing partial samples.

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Authors and Affiliations

  1. State Key Laboratory for Biology of Plant Disease and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 100094, Beijing, China

    Dong Yibo, Wu Hongjin & Peng Yufa

  2. Institute of Biotechnology, Chinese Academy of Agricultural Sciences, 100081, Beijing, China

    Pei Xinwu, Wang Xujing & Jia Shirong

  3. College of Agriculture Science, MOE Key Lab of Tropic Biological Resources, Hainan University, 570228, Haikou, China

    Yuan Qianhua

Authors
  1. Dong Yibo
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  2. Pei Xinwu
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  3. Yuan Qianhua
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  4. Wu Hongjin
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  5. Wang Xujing
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  6. Jia Shirong
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  7. Peng Yufa
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Corresponding authors

Correspondence to Pei Xinwu or Peng Yufa.

Additional information

An erratum to this article can be found at http://dx.doi.org/10.1007/s10722-010-9543-y

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Yibo, D., Xinwu, P., Qianhua, Y. et al. Ecological, morphological and genetic diversity in Oryza rufipogon Griff. (Poaceae) from Hainan Island, China. Genet Resour Crop Evol 57, 915–926 (2010). https://doi.org/10.1007/s10722-009-9523-2

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  • DOI: https://doi.org/10.1007/s10722-009-9523-2

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