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Sampling error in non-invasive genetic analyses of an endangered social carnivore

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Abstract

Modern non-invasive genetic technologies are useful in studies of rare and difficult-to-observe species. An examination of endangered African wild dog (Lycaon pictus) faecal DNA revealed that 11.4% of samples were assigned incorrectly to an individual. Sampling mistakes in the field are not normally considered in non-invasive genetic assessments, but can be a significant source of error. To ensure meticulous data interpretation, non-invasive genetic studies should track and report sampling inaccuracies.

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References

  • Archie EA, Maldonado JE, Hollister-Smith JA et al (2008) Fine-scale population genetic structure in a fission–fusion society. Mol Ecol 17:2666–2679. doi:10.1111/j.1365-294X.2008.03797.x

    Article  PubMed  Google Scholar 

  • Bonin A, Bellemain E, Eidesen PB et al (2004) How to track and assess genotyping errors in population genetic studies. Mol Ecol 13:3261–3273. doi:10.1111/j.1365-294X.2004.02346.x

    Article  CAS  PubMed  Google Scholar 

  • Creel S, Creel NM (2002) The African wild dog: behavior, ecology and conservation. Princeton University Press, Princeton

    Google Scholar 

  • Eggert LS, Maldonado JE, Fleischer RC (2005) Nucleic acid isolation from ecological samples: animal scat and other associated materials. In: Molecular evolution: producing the biochemical data, part B. Methods Enzym 395:73–87

  • Estes R, Goddard J (1967) Prey selection and hunting behaviour of the African wild dog. J Wildl Manage 31:52–70. doi:10.2307/3798360

    Article  Google Scholar 

  • Gabriele CM, Straley JM, Mizroch SA et al (2001) Estimating the mortality rate of humpback whale calves in the central North Pacific Ocean. Can J Zool 79:589–600. doi:10.1139/cjz-79-4-589

    Article  Google Scholar 

  • Gusset M, Ryan SJ, Hofmeyr M et al (2008) Efforts going to the dogs? Evaluating attempts to reintroduce endangered wild dogs in South Africa. J Appl Ecol 45:100–108

    Article  Google Scholar 

  • Keay JM, Singh J, Gaunt MC, Kaur T (2006) Fecal glucocorticoids and their metabolites as indicators of stress in various mammalian species: a literature review. J Zoo Wildl Med 37:234–244. doi:10.1638/05-050.1

    Article  PubMed  Google Scholar 

  • Kelly MJ (2001) Computer-aided photograph matching in studies using individual identification: an example from Serengeti cheetahs. J Mammal 82:440–449. doi:10.1644/1545-1542(2001)082<0440:CAPMIS>2.0.CO;2

    Article  Google Scholar 

  • Kohn MK, Wayne RK (1997) Facts from feces revisited. Trends Ecol Evol 12:223–227. doi:10.1016/S0169-5347(97)01050-1

    Article  Google Scholar 

  • Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Mol Ecol 7:639–655. doi:10.1046/j.1365-294x.1998.00374.x

    Article  CAS  PubMed  Google Scholar 

  • Miller CR, Joyce P, Waits LP (2002) Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics 160:357–366

    PubMed  Google Scholar 

  • Milligan JL, Davis AK, Altizer SM (2003) Errors associated with using colored leg bands to identify wild birds. J Field Ornithol 74:111–118

    Google Scholar 

  • Stavisky RC, Whitten PL, Hammett DH, Kaplan JR (2001) Lake pigments facilitate analysis of faecal cortisol and behavior in group-housed macaques. Am J Phys Anthropol 116:51–58. doi:10.1002/ajpa.1101

    Article  CAS  PubMed  Google Scholar 

  • Waits LP, Luikart G, Taberlet P (2001) Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Mol Ecol 10:249–256. doi:10.1046/j.1365-294X.2001.01185.x

    Article  CAS  PubMed  Google Scholar 

  • Woodroffe R, Ginsberg JR, Macdonald DW (1997) The African wild dog- status survey and conservation action plan. IUCN, Gland

    Google Scholar 

Download references

Acknowledgments

This research was supported by Smithsonian Institution, University of Pretoria, Rotterdam Thandiza Fund, Humboldt State University, Association of Zoos and Aquariums, Disney Wildlife Conservation Fund, Knowsley Safari Park, DST-NRF Centre of Excellence for Invasion Biology, Pittsburgh Zoo and Morris Animal Foundation.

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Correspondence to Penny A. Spiering.

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Spiering, P.A., Gunther, M.S., Wildt, D.E. et al. Sampling error in non-invasive genetic analyses of an endangered social carnivore. Conserv Genet 10, 2005–2007 (2009). https://doi.org/10.1007/s10592-009-9880-6

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  • DOI: https://doi.org/10.1007/s10592-009-9880-6

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