Abstract
Human activities have long been recognized as a major force shaping the biosphere. Advancing urbanization is one such transformation with unforeseen effect on the soil microbiota, including the cyanobacteria. This includes the loss of agronomically important nitrogen fixing cyanobacteria, which may negatively affect the agricultural productivity of peri-urban soils. However, empirical studies are lacking to validate the statement. Even, in journals specifically dealing with diversity and distribution of organisms, urban ecology and ecosystems. Here, I describe a critical area beset with challenges that needs to be investigated.
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Bender J, Phillips P (2004) Microbial mats for multiple applications in aquaculture and bioremediation. Bioresour Technol 94:229–238
Beyer L, Blume HP, Elsner DC, Willnow A (1995) Soil organic matter composition and microbial activity in urban soils. Sci Total Environ 168:267–278
Biasioli M, Barberis R, Ajmone-Marsan F, Diva PRA (2006) The influence of a large city on some soil properties and metals content. Sci Total Environ 356:154–164
Budianshi S (1995) Nature’s keeper. Free Press, New York
Cole D (2000) Paradox of the primordial: ecological restoration in wilderness. Ecol Restor 18:77–85
De Clerck O, Guiry MD, Leliaert F, Samyn Y, Verbruggen H (2013) Algal taxonomy: a road to nowhere. J Phycol 49:215–225
Green J, Bohannan BJM (2006) Spatial scaling of microbial biodiversity. Trends Ecol Evol 21:501–507
Green DM, Oleksyszyn M (2002) Enzyme activities and carbon dioxide flux in a Sonoran Desert urban ecosystem. Soil Sci Soc Am J 66:2002–2008
Grimm NB, Faeth SH, Golubiewski NE, Redman CL, Wu J, Bai X, Briggs JM (2008) Global change and the ecology of cities. Science 319:756–760
Johansen JR, Casamatta DA (2005) Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algol Stud 117:71–93
Johansen JR, Kováčik L, Casamatta DA, Fučíková K, Kaštovský J (2011) Utility of 16S-23S ITS sequence and secondary structure for recognition of intrageneric and intergeneric limits within cyanobacterial taxa: leptolyngbya corticola sp. nov. (Pseudanabaenaceae, Cyanobacteria). Nova Hedwigia 92:283–302
Johansen JR, Bohunická M, Lukešová A, Hrčková K, Vaccarino MA, Chesarino NM (2014) Morphological and molecular characterization within 26 strains of the genus Cylindrospermum (Nostocaceae, Cyanobacteria), with descriptions of three new species. J Phycol 50:187–202
Knoll AH (2008) Cyanobacteria and earth history. In: Herrero A, Flores E (eds) The cyanobacteria: molecular biology, genomics and evolution. Caister Academic Press, Norfolk, pp 1–20
Komárek J, Kaštovský J, Mareš J, Johansen JR (2014) Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. Preslia 86:295–335
Lee CS, Li X, Shi W, Cheung SC, Thornton I (2006) Metal contamination in urban, suburban, and country park soils of Hong Kong: a study based on GIS and multivariate statistics. Sci Total Environ 356:45–61
Marcotullio PJ, Braimoh AK, Onishi T (2008) Impact of urbanization on soil. In: Braimoh AK, Vlek PLG (eds) Land Use and Soil Resources. Springer, Dordrecht, pp 201–250
Marris E (2009) Ragamuffin earth. Nature 460:450–453
McKinney ML (2006) Urbanization as a major cause of biotic homogenization. Biol Conserv 127:247–260
Megharaj M, Ramakrishnan B, Venkateswarlu K, Sethunathan N, Naidu R (2011) Bioremediation approaches for organic pollutants: a critical perspective. Environ Int 37:1362–1375
Mehta SK, Gaur JP (2005) Use of algae for removing heavy metal ions from wastewater: progress and prospects. Crit Rev Biotechnol 25:113–152
Newsone D, Moore SA, Dowling RK (2012) Natural area tourism: ecology, impact and management, 2nd edn. Channel View Publication, Bristol, p 442
Paerl HW, Husiman J (2009) Climate change: a catalyst for global expansion of harmful cyanobacterial blooms. Environ Microbiol Rep 1:27–37
Page RDM (2012) Dark taxa: GenBank in a post-taxonomic world. Available at http://iphylo.blogspot.be/2011/04/dark-taxa-genbank-in-post-taxonomic.html. Assessed 02 Dec 2014
Palinska KA, Surosz W (2014) Taxonomy of cyanobacteria: a contribution to consensus approach. Hydrobiologia 740:1–11
Pan H, Song LR, Liu YD, Borner T (2002) Detection of hepatotoxic Microcystis strains by PCR with intact cells from both culture and environmental samples. Arch Microbiol 178:421–427
Pimm SL, Raven P (2000) Biodiversity: extinction by numbers. Nature 405:843–845
Prasanna R, Sood A, Rath SK, Singh PK (2014) Cyanobacteria as “green” option for sustainable agriculture. In: Sharma NK, Rai AK, Stal LJ (eds) Cyanobacteria: An Economic Perspective. Wiley, UK, pp 145–166
Rai AK (2014) Biological nitrogen fixation for sustainable agriculture and global food security. In: Despande MV, Ruiz-Herrera J (eds) Biotechnology: beyond borders, Proceedings of the Indo-Mexico workshop on biotechnology, The CSIR-NCL, Pune, 7–9 October 2013. pp 15–21
Rajaniemi P, Hrouzek P, Kaštovská K, Willame R, Rantala A, Hoffmann L, Komárek J, Sivonen K (2005a) Phylogenetic and morphological evaluation of the genera Anabaena. Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria). Int J Syst Evol Microbiol 55:11–26
Rajaniemi P, Komárek J, Hrouzek P, Willame R, Kaštovská K, Hoffmann L, Sivonen K (2005b) Taxonomic consequences from the combined molecular and phenotype evaluation of selected Anabaena and Aphanizomenon strains. Algol Stud 117:371–391
Rajaniemi-Wacklin P, Rantala A, Mugnai MA, Turicchia S, Ventura S, Komárková J, Lepistö L, Sivonen K (2006) Correspondence between phylogeny and morphology of Snowella spp. and Woronichinia naegeliana, Cyanobacteria, commonly occurring in lakes. J Phycol 42:226–232
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S et al (2007) The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5:398–431
Sharma NK, Rai AK (2011) Biodiversity and biogeography of microalgae: progress and pitfalls. Environ Rev 19:1–15
Sharma NK, Tiwari SP, Tripathi K, Rai AK (2011) Sustainability and cyanobacteria (blue-green algae): facts and challenges. J Appl Phycol 23:1059–1081
Sharma NK, Rai AK, Stal LJ (2014) Cyanobacteria: an economic perspective. Willey-Blackwel, UK, p 376
Soper K (1995) What is nature? culture, politics and the non-humans. Wiley, Oxford
Subramanian G, Uma L (1996) Cyanobacteria in pollution control. J Sci Ind Res 55:685–692
Taniguchi M, Burnett WC, Ness G (2009) Human impacts on urban subsurface environment. Sci Total Environ 407:3073–3074
Tillett D, Neilan BA (2000) Xanthogenate nucleic acid isolation from cultured and environmental cyanobacteria. J Phycol 36:251–258
Tripathi K, Sharma NK, Kageyama H, Takabe T, Rai AK (2013) Physiological, biochemical and molecular responses of the halophilic cyanobacterium Aphanothece halophytica to Pi-deficiency. Eur J Phycol 48:461–473
Vakhlu J, Sudan AK, Johri BN (2008) Metagenomics: future of microbial gene mining. Indian J Microbiol 48:202–215
Whitton BA (2012) Ecology of cyanobacteria II: their diversity in space and time. Springer, Dordrecht, p 760
Wick AF, Haus NW, Sukkariyah BF, Haering KC, Daniels WL (2011) Remediation of PAH-contaminated soils and sediments: a literature review. Virginia Polytechnic Institute and State University, USA, p 102. Accessed 15 Aug 2013
Wilson EO (1992) The diversity of life. Harvard University Press, Cambridge, p 464
Wollcka D, Suszek A, Borkowski A, Bielecka A (2009) Application of aerobic microorganisms in bioremediation in situ of soil contaminated by petroleum products. Bioresour Technol 100:3221–3227
World Bank Report (2010) Rising global interest in farmland: can it yield sustainable and equitable benefits. A World Bank Report, Washington DC, p 164
Yilmaz M, Phlips EJ, Tillet D (2009) Improved methods for the isolation of cyanobacterial DNA from environmental samples. J Phycol 45:517–521
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Communicated by Anurag chaurasia.
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Sharma, N.K. From natural to human-impacted ecosystems: rationale to investigate the impact of urbanization on cyanobacterial diversity in soils. Biodivers Conserv 24, 1007–1015 (2015). https://doi.org/10.1007/s10531-015-0897-5
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DOI: https://doi.org/10.1007/s10531-015-0897-5