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Sulfolobus solfataricus thiol redox puzzle: characterization of an atypical protein disulfide oxidoreductase

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Abstract

Protein disulfide oxidoreductases (PDOs) are proteins involved in disulfide bond formation playing a crucial role in adaptation to extreme environment. This paper reports the functional and structural characterization of Sso1120, a PDO from the hyperthermophilic archaeon Sulfolobus solfataricus. The protein was expressed in Escherichia coli and purified to homogeneity. The functional characterization showed that the enzyme has reductase activity, as tested by insulin assay, but differently from the other PDOs, it does not present isomerase activity. In addition it is able to form a redox couple with the thioredoxin reductase that could be used in undiscovered pathways. The protein revealed a melting point of around 90 °C in CD spectroscopy-monitored thermal denaturation and high denaturant resistance. The X-ray crystallographic structure was solved at 1.80 Å resolution, showing differences with respect to other PDOs and an unexpected similarity with the N-terminal domain of the alkyl hydroperoxide reductase F component from Salmonella typhimurium. On the basis of the reported data and of bioinformatics and phylogenetic analyses, a possible involvement of this atypical PDO in a new antioxidant system of S. solfataricus has been proposed.

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References

  • Beeby M, O’Connor BD, Ryttersgaard C, Boutz DR, Perry LJ, Yeates TO (2005) The genomics of disulfide bonding and protein stabilization in thermophiles. PLoS Biol 3:e309. doi:10.1371/journal.pbio.0030309

    Article  PubMed Central  PubMed  Google Scholar 

  • Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D54:905–921. doi:10.1107/S0907444998003254

    CAS  Google Scholar 

  • Contursi P, Jensen S, Aucelli T, Rossi M, Bartolucci S, She Q (2006) Characterization of the Sulfolobus host-SSV2 virus interaction. Extremophiles 10:615–627

    Article  CAS  PubMed  Google Scholar 

  • Contursi P, D’Ambrosio K, Pirone L, Pedone E, Aucelli T, She Q, De Simone G, Bartolucci S (2011) C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family. Biochem J 435:157–166

    Article  CAS  PubMed  Google Scholar 

  • Cudney R, Patel S, Weisgraber K, Newhouse Y, McPherson A (1994) Screening and optimization strategies for macromolecular crystal growth. Acta Crystallogr D50:414–423. doi:10.1107/S0907444994002660

    CAS  Google Scholar 

  • D’Ambrosio K, Pedone E, Langella E, De Simone G, Rossi M, Pedone C, Bartolucci S (2006) A novel member of the protein disulfide oxidoreductase family from Aeropyrum pernix K1: structure, function and electrostatics. J Mol Biol 362:743–752. doi:10.1016/j.jmb.2006.07.038

    Article  PubMed  Google Scholar 

  • Gruber CW, Cemazar M, Heras B, Martin JL, Craik DJ (2006) Protein disulfide isomerase: the structure of oxidative folding. Trends Biochem Sci 31:455–464. doi:10.1016/j.tibs.2006.06.001

    Article  CAS  PubMed  Google Scholar 

  • Guagliardi A, de Pascale D, Cannio R, Nobile V, Bartolucci S, Rossi M (1995) The purification, cloning, and high level expression of a glutaredoxin-like protein from the hyperthermophilic archaeon Pyrococcus furiosus. J Biol Chem 270:5748–5755

    Article  CAS  PubMed  Google Scholar 

  • Holm L, Rosenstrom P (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res 38:W545–W549. doi:10.1093/Nar/Gkq366

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Jancarik J, Kim SH (1991) Sparse-matrix dampling - a screening method for crystallization of proteins. J Appl Cryst 24:409–411. doi:10.1107/S0021889891004430

    Article  CAS  Google Scholar 

  • Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron-density maps and the location of errors in these models. Acta Crystallogr A 47:110–119. doi:10.1107/S0108767390010224

    Article  PubMed  Google Scholar 

  • Koshkin A, Knudsen GM, de Montellano PRO (2004) Intermolecular interactions in the AhpC/AhpD antioxidant defense system of Mycobacterium tuberculosis. Arch Biochem Biophys 427:41–47. doi:10.1016/j.abb.2004.04.017

    Article  CAS  PubMed  Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Article  CAS  PubMed  Google Scholar 

  • Laskowski RA, Macarthur MW, Moss DS, Thornton JM (1993) Procheck: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26:283–291. doi:10.1107/S0021889892009944

    Article  CAS  Google Scholar 

  • Limauro D, Pedone E, Pirone L, Bartolucci S (2006) Identification and characterization of 1-Cys peroxiredoxin from Sulfolobus solfataricus and its involvement in the response to oxidative stress. FEBS J 273:721–731. doi:10.1111/j.1742-4658.2006.05104.x

    Article  CAS  PubMed  Google Scholar 

  • Limauro D, Pedone E, Galdi I, Bartolucci S (2008) Peroxiredoxins as cellular guardians in Sulfolobus solfataricus: characterization of Bcp1, Bcp3 and Bcp4. FEBS J 275:2067–2077. doi:10.1111/j.1742-4658.2008.06361.x

    Article  CAS  PubMed  Google Scholar 

  • Limauro D, Saviano M, Galdi I, Rossi M, Bartolucci S, Pedone E (2009) Sulfolobus solfataricus protein disulphide oxidoreductase: insight into the roles of its redox sites. Protein Eng Des Sel 22:19–26. doi:10.1093/protein/gzn061

    Article  CAS  PubMed  Google Scholar 

  • Limauro D, D’Ambrosio K, Langella E, De Simone G, Galdi I, Pedone C, Pedone E, Bartolucci S (2010) Exploring the catalytic mechanism of the first dimeric Bcp: functional, structural and docking analyses of Bcp4 from Sulfolobus solfataricus. Biochimie 92:1435–1444. doi:10.1016/j.biochi.2010.07.006

    Article  CAS  PubMed  Google Scholar 

  • Marino SM, Gladyshev VN (2011) Redox biology: computational approaches to the investigation of functional cysteine residues. Antioxid Redox Signal 15:135–146. doi:10.1089/ars 2010.3561

    Article  CAS  PubMed  Google Scholar 

  • McPherson A (1990) Current approaches to macromolecular crystallization. Eur J Biochem 189:1–23. doi:10.1111/j.1432-1033.1990.tb15454.x

    Article  CAS  PubMed  Google Scholar 

  • Myers JK, Pace CN, Scholtz JM (1995) Denaturant M-values and heat-capacity changes: relation to changes in accessible surface-areas of protein unfolding. Protein Sci 4:2138–2148

    Article  CAS  PubMed  Google Scholar 

  • Navaza J (1994) Amore: an automated package for molecular replacement. Acta Crystallogr A 50:157–163. doi:10.1107/S0108767393007597

    Article  Google Scholar 

  • Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Method Enzymol 276:307–326. doi:10.1016/S0076-6879(97)76066-X

    Article  CAS  Google Scholar 

  • Pedone E, Saviano M, Rossi M, Bartolucci S (2001) A single point mutation (Glu85Arg) increases the stability of the thioredoxin from Escherichia coli. Protein Eng 14:255–260

    Article  CAS  PubMed  Google Scholar 

  • Pedone E, Ren B, Ladenstein R, Rossi M, Bartolucci S (2004) Functional properties of the protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus: a member of a novel protein family related to protein disulfide-isomerase. Eur J Biochem 271:3437–3448. doi:10.1111/j.0014-2956.2004.04282

    Article  CAS  PubMed  Google Scholar 

  • Pedone E, D’Ambrosio K, De Simone G, Rossi M, Pedone C, Bartolucci S (2006a) Insights on a new PDI-like family: structural and functional analysis of a protein disulfide oxidoreductase from the bacterium Aquifex aeolicus. J Mol Biol 356:155–164. doi:10.1016/j.jmb.2005.11.041

    Article  CAS  PubMed  Google Scholar 

  • Pedone E, Limauro D, D’Alterio R, Rossi M, Bartolucci S (2006b) Characterization of a multifunctional protein disulfide oxidoreductase from Sulfolobus solfataricus. FEBS J 273:5407–5420. doi:10.1111/j.1742-4658.2006.05533.x

    Article  CAS  PubMed  Google Scholar 

  • Pedone E, Limauro D, Bartolucci S (2008) The machinery for oxidative protein folding in thermophiles. Antioxid Redox Signal 10:157–169. doi:10.1089/ars 2007.1855

    Article  CAS  PubMed  Google Scholar 

  • Pedone E, Limauro D, D’Ambrosio K, De Simone G, Bartolucci S (2010) Multiple catalytically active thioredoxin folds: a winning strategy for many functions. Cell Mol Life Sci 67:3797–3814. doi:10.1007/s00018-010-0449-9

    Article  CAS  PubMed  Google Scholar 

  • Ren B, Tibbelin G, de Pascale D, Rossi M, Bartolucci S, Ladenstein R (1998) A protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus contains two thioredoxin fold units. Nat Struct Biol 5:602–611. doi:10.1038/862

    Article  CAS  PubMed  Google Scholar 

  • Reynolds CM, Poole LB (2000) Attachment of the N-terminal domain of Salmonella typhimurium AhpF to Escherichia coli thioredoxin reductase confers AhpC reductase activity but does not affect thioredoxin reductase activity. Biochemistry 39:8859–8869. doi:10.1021/Bi000826d

    Article  CAS  PubMed  Google Scholar 

  • Roberts BR, Wood ZA, Jonsson TJ, Poole LB, Karplus PA (2005) Oxidized and synchrotron cleaved structures of the disulfide redox center in the N-terminal domain of Salmonella typhimurium AhpF. Protein Sci 14:2414–2420. doi:10.1110/Ps.051459705

    Article  CAS  PubMed  Google Scholar 

  • Sato Y, Inaba K (2012) Disulfide bond formation network in the three biological kingdoms, bacteria, fungi and mammals. FEBS J 279:2262–2271. doi:10.1111/j.1742-4658.2012.08593.x

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

We gratefully acknowledge the support from MIUR for project FIRB no. RBRN07BMCT and Università Federico II per l’Avvio di Ricerche Originali (FARO 2011) CUP:E61J1200060005.

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Correspondence to Katia D’Ambrosio or Emilia Pedone.

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Communicated by S. Albers.

D. Limauro and G. De Simone contributed equally to this work.

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Limauro, D., De Simone, G., Pirone, L. et al. Sulfolobus solfataricus thiol redox puzzle: characterization of an atypical protein disulfide oxidoreductase. Extremophiles 18, 219–228 (2014). https://doi.org/10.1007/s00792-013-0607-8

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  • DOI: https://doi.org/10.1007/s00792-013-0607-8

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