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Complete genome sequence of a new bipartite begomovirus infecting Boehmeria leiophylla in China

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Abstract

A bipartite begomovirus was identified from a Boehmeria leiophylla plant sample exhibiting yellow mosaic symptoms collected in Nabanhe National Nature Reserve, Xishuangbanna, Yunnan, China. Five complete DNA-A and four DNA-B genome sequences were obtained by rolling-circle amplification (RCA), cloned, and sequenced. All DNA-A sequences were determined to be 2759 nucleotides in size, sharing 99.9%–100% nucleotide sequence identity with each other. The DNA-B sequences were comprised of 2673 nucleotides, sharing 98.6–100% nucleotide sequence identity with each other. Genomic organization of the begomovirus was typical of Old World bipartite begomoviruses. Sequence analysis revealed 81.84% nucleotide sequence identity to tomato leaf curl Hsinchu virus (ToLCHsV) from China for the DNA A component and 67.23% identity to the squash leaf curl China virus (SLCCNV) from India for the DNA B component. The sequence comparisons suggest that this bipartite begomovirus represents a novel species for which we propose the name “Ramie yellow mosaic virus”.

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References

  1. King AMQ, Adams MJ, Carstcns EB, Lefkowitz EJ (2012) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Elsevier/Academic Press, San Diego, pp 351–372

    Google Scholar 

  2. Nawaz-ul-Rehman MS, Fauquet CM (2009) Evolution of geminiviruses and their satellites. FEBS Lett 583:1825–1832

    Article  PubMed  CAS  Google Scholar 

  3. Harrison BD, Robinson DJ (1999) Natural genomic and antigenic variation in whitefly-transmitted geminiviruses (Begomoviruses). Annu Rev Phytopathol 37:369–398

    Article  PubMed  CAS  Google Scholar 

  4. Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s Armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394

    Article  PubMed  CAS  Google Scholar 

  5. Hanley-Bowdoin L, Bejarano ER, Robertson D, Mansoor S (2013) Geminiviruses: masters at redirecting and reprogramming plant processes. Nat Rev Microbiol 11:777–788

    Article  PubMed  CAS  Google Scholar 

  6. Briddon RW, Patil BL, Bagewadi B, Nawaz-ul-Rehman MS, Fauquet CM (2010) Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses. BMC Evol Biol 10:97

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  7. Bernard V, Brunaud V, Lecharny A (2010) TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. BMC Genom 11:166

    Article  CAS  Google Scholar 

  8. Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopathol 49:219–248

    Article  PubMed  CAS  Google Scholar 

  9. Kenyon L, Tsai WS, Shih SL, Lee LM (2014) Emergence and diversity of begomoviruses infecting solanaceous crops in East and Southeast Asia. Virus Res 186:104–113

    Article  PubMed  CAS  Google Scholar 

  10. Li J, Zhang XY, Qian YJ (2016) Molecular characterization of Ramie mosaic virus isolates detected in Jiangsu and Zhejiang provinces, China. Acta Virol 54:225–228

    Article  CAS  Google Scholar 

  11. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh tissue. Phytochem Bull 19:11–15

    Google Scholar 

  12. Xie Y, Zhou XP, Zhang ZK, Qi YJ (2002) Tobacco curly shoot virus isolated in Yunnan is distinct species of Begomovirus. Chin Sci Bull 47:197–200

    Article  CAS  Google Scholar 

  13. Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain-reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77:340–347

    Article  CAS  Google Scholar 

  14. Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA beta-a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318

    Article  PubMed  CAS  Google Scholar 

  15. Bull SE, Briddon RW, Markham PG (2003) Universal primers for the PCR-mediated amplification of DNA 1: a satellite-like molecule associated with begomovirus-DNAβ complexes. Mol Biotechnol 23:83–86

    Article  PubMed  CAS  Google Scholar 

  16. Guo W, Yang XL, Xie Y, Cui XF, Zhou XP (2009) Tomato yellow leaf curl Thailand virus-[Y72] from Yunnan is a monopartite begomovirus associated with DNA β. Virus Genes 38:328–333

    Article  PubMed  CAS  Google Scholar 

  17. Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, RamosSobrinho R, Silva JCF, Fiallo-OlivéE Briddon RW, HernándezZepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619

    Article  PubMed  CAS  Google Scholar 

  18. Muhire B, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9(9):e108277

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  19. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  20. Zhang J, Wu ZJ (2013) First Report of Kudzu mosaic virus on Pueraria montana (Kudzu) in China. Plant Dis 97:148

    Article  Google Scholar 

  21. Li J, Zhou XP (2010) Molecular characterization and experimental host-range of two begomoviruses infecting Clerodendrum cyrtophyllum in China. Virus Genes 41:250–259

    Article  PubMed  CAS  Google Scholar 

Download references

Funding

This work was supported by the National Natural Science Foundation of China (U1136606 and 31560501).

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Correspondence to Ming Ding or Zhongkai Zhang.

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The authors have read and have abided by the statement of ethical standards for manuscripts submitted to Archives of Virology.

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This article does not contain any studies with human participants or animals performed by any of the authors.

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The authors declare that they have no conflict of interest.

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Handling Editor: Jesús Navas-Castillo.

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Zhao, L., Zhong, J., Zhang, X. et al. Complete genome sequence of a new bipartite begomovirus infecting Boehmeria leiophylla in China. Arch Virol 163, 1989–1992 (2018). https://doi.org/10.1007/s00705-018-3802-1

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  • DOI: https://doi.org/10.1007/s00705-018-3802-1

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