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Complete genome sequence of a putative new caulimovirus which exists as endogenous pararetroviral sequences in Angelica dahurica

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Abstract

A virus isolate designated Angelica bushy stunt virus (AnBSV), provisionally representing a new species in the genus Caulimovirus, was discovered in the medicinal plant Angelica dahurica. The complete 8,300-nt genomic DNA of AnBSV had seven putative open reading frames containing conserved domains/motifs, which are typical features of caulimoviruses, and showed the greatest nucleotide sequence identity (74% identity and 27% query coverage) to a lamium leaf distortion virus isolate. Interestingly, the new caulimovirus exists as endogenous pararetroviral sequences in the host plant and is considered to have multiple defective plant genome-integrated copies that may lead to the generation of subgenomic DNA species.

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Acknowledgements

This research was supported by iPET (Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries; Project No. 112159-5), Ministry of Agriculture, Food and Rural Affairs (MAFRA), Republic of Korea.

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Author notes

  1. Seungmo Lim

    Present address: Crop Production Technology Research Division, National Institute of Crop Science, Rural Development Administration, Miryang, 50424, Republic of Korea

  2. Seungmo Lim and Dasom Baek contributed equally to this study.

Authors and Affiliations

  1. Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea

    Seungmo Lim, Dasom Baek, Davaajargal Igori & Jae Sun Moon

  2. Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea

    Seungmo Lim, Dasom Baek, Davaajargal Igori & Jae Sun Moon

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  1. Seungmo Lim
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  2. Dasom Baek
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  3. Davaajargal Igori
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Correspondence to Jae Sun Moon.

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Lim, S., Baek, D., Igori, D. et al. Complete genome sequence of a putative new caulimovirus which exists as endogenous pararetroviral sequences in Angelica dahurica . Arch Virol 162, 3837–3842 (2017). https://doi.org/10.1007/s00705-017-3517-8

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  • DOI: https://doi.org/10.1007/s00705-017-3517-8

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