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Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea

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Abstract

A novel cytopathogenic paramyxovirus was isolated from a lung sample from a piglet, using continuous porcine alveolar macrophage cells. Morphologic and genetic studies indicated that this porcine virus (pPIV5) belongs to the species Parainfluenza 5 in the family Paramyxoviridae. We attempted to determine the complete nucleotide sequence of the first Korean pPIV5 isolate, designated KNU-11. The full-length genome of KNU-11 was found to be 15,246 nucleotides in length and consist of seven nonoverlapping genes (3′-N-V/P-M-F-SH-HN-L-5′) predicted to encode eight proteins. The overall degree of nucleotide sequence identity was 98.7 % between KNU-11 and PIV5 (formerly simian virus 5, SV5), a prototype paramyxovirus, and the putative proteins had 74.4 to 99.2 % amino acid identity to those of PIV5. Phylogenetic analysis further demonstrated that the novel pPIV5 isolate is a member of the genus Rubulavirus of the subfamily Paramyxovirinae. The present study describes the identification and genomic characterization of a pPIV5 isolate in South Korea.

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Acknowledgments

This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (2013R1A2A2A01004355) and Technology Development Program for Bio-industry, Ministry for Agriculture, Food and Rural Affairs, Republic of Korea (311007-05-1-HD120).

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  1. Department of Microbiology, College of Natural Sciences, Kyungpook National University, Daegu, 702-701, Republic of Korea

    Yu Na Lee & Changhee Lee

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  1. Yu Na Lee
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  2. Changhee Lee
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Correspondence to Changhee Lee.

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Lee, Y.N., Lee, C. Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea. Arch Virol 158, 1765–1772 (2013). https://doi.org/10.1007/s00705-013-1770-z

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  • DOI: https://doi.org/10.1007/s00705-013-1770-z

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