Abstract
Dendrobium officinale (Orchidaceae) is used for traditional medicine and is critically endangered in China. To investigate the genetic structure of this species and to offer some advice on conservation strategies, 84 individuals from nine wild populations of D. officinale were analyzed using the method of sequence-related amplified polymorphism. A high level of genetic diversity was detected (PPB = 88.07%, H E = 0.2880) at the species level. However, the genetic diversity at the population level was lower (PPB = 51.68%, H E = 0.1878) in comparison with other species with similar life history characteristics. Based on analysis of molecular variation, there was moderate variation between pairs of populations with Φ ST values ranging from 0.1327 to 0.4151 and on average 27.05% of the genetic variation occurred among populations. Two main clusters were shown in UPGMA using TFPGA, which is consistent with the result of principal coordinate analysis using NTSYS. In situ conservation is the first advocated and and ex situ should be proposed at the same time to protect the endangered plant and to preserve germplasm resources.
Similar content being viewed by others
References
Borba EL, Semir J (2001) Pollinator specificity and convergence in fly-pollinated Pleurothallis (Orchidaceae) species: a multiple population approach. Ann Bot 88:75–88
Budak H, Shearman RC, Parmaksiz I, Gaussoin RE, Riordan TP, Dewiak I (2004) Molecular characterization of buffalograss germplasm using sequence-related amplified polymorphism markers. Theor Appl Genet 108:328–334
Bussell JD (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Molec Ecol 8:775–789
Case MA (1993) High levels of allozyme variation within Cyperipedium calceolus (Orchidaceae) and low levels of divergence among its varieties. Syst Bot 18:663–677
Chun Z (2005) Resource crisis of dendrobium and its protective countermeasures. Resour Dev Mark 21:139–140
Ding XY, Xu LS, Wang ZT, Shi GX, Xu H (2001) Studies on population difference of Dendrobium officinale. Differences in morphological structure. Chin Tradit Herb Drugs 32:828–831
Eduardo LB, Joaa OS, George JS (2001) Self-incompatibility, inbreeding depression and crossing potential in five Brazilian Pleurothallis (Orchidaceae) species. Ann Bot 88:89–99
Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variation inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491
Ferriol M, Pico B, Nuez F (2003) Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor Appl Genet 107:271–282
Fu LK (1992) China plant red data book: rare and endangered plants, I. Science Press, Beijing
Gao L, Yang B (2006) Genetic diversity of wild Cymbidium goeringii (Orchidaceae) populations from Hubei based on ISSR analysis. Biodivers Sci 14:250–257
George CG, Joseph RJ (1979) Genetic distance and heterozygosity estimates in electrophoretic studies: effects of sample size. Copeia 2:242–249
Gugerli F, Eichenberger K, Schneller JJ (1999) Promiscuity in populations of the cushion plant Saxifraga oppositifolia in the Swiss Alps as inferred from random amplified polymorphic DNA (RAPD). Molec Ecol 8:453–461
Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding, and genetic resources. Sinauer, Sunderland, pp 43–63
Hamrick JL, Godt MJW (1995) Conservation genetic of endemic species. In: Avise JC, Hamrick JL (eds) Conservation genetics. Chapman & Hall, New York, pp 281–304
Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Philos Trans B 351:1291–1298
Hamrick JL, Godt MJW, Murawski DA, Loveless MD (1991) Correlations between species traits and allozyme diversity: Implications for conservation biology. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 75–86
Hickey RJ, Vincent MA, Gutmann SI (1991) Genetic variation in running buffals clover Trifolium soloniferum, Fabaceae. Conserv Biol 5:309–316
Hogbin PM, Peakall R (1999) Evaluation of the contribution of genetic research to the management of the endangered plant Zieria prostrata. Conserv Biol 13:514–522
IUCN/SSC Orchid Specialist Group (1996) Orchids: status survey and conservation action plan. IUCN, Gland Switzerland and Cambridge
Ji ZH (1999) Flora of China, vol 19. Science Press, Beijing, p 117
Johansen B (1990) Incompatibility in Dendrobium (Orchidaceae). Bot J Linn Soc 103:165–196
Lande R (1988) Genetics and demography in biological conservation. Science 241:1455–1460
Lewontin RC (1972) The apportionment of human diversity. Evol Biol 6:381–398
Li A, Ge S (2006) Genetic variation and conservation of Changnienia amoena, an endangered orchid endemic to China. Pl Syst Evol 258:251–260
Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455–461
Marshall DR, Brown AHD (1975) Optimum sampling strategies in genetic conservation. In: Frankel OH, Hawkes JG (eds) Crop genetic resource for today and tomorrow. Cambrige University Press, Cambrige, pp 53–80
Maunder M, Culham A, Alden B, Zizka G, Orliac C, Lobin W, Bordeu A, Ramirez JM, Glissmann-Gough S (2000) Conservation of the Toromiro tree: case study in the management of a plant extinct in the wild. Conserv Biol 14:1341–1350
Miller MP (1997) Tools for population genetic analysis (TFPGA) 1.3: a windows program for the analysis of allozyme and molecular population genetic data. Department of Biological Sciences, Northern Arizona University, Flagstaff
Miller MP (1998) AMOVA-PREP. A program for the preparation of AMOVA input files from dominant-marker raw data, release 1.01. Department of Biological Sciences, Northern Arizona University, Flagstaff
Nei M (1972) Genetic distances between populations. Amer Naturalist 106:283–292
Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321–3323
Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590
Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Pl Ecol Evol Syst 3:93–114
Palacios C, Kresovich S, González-Candelas F (1999) A population genetic study of the endangered plant species Limonium dufourii (Plumbaginaceae) based on amplified fragment length polymorphism (AFLP). Molec Ecol 8:645–657
Rohlf FJ (2000) NTSYS-pc: numerical taxonomy and multivariate analysis system, Version 2.1. Exeter Software: Setauket, New York
Scacchi R, De Angelis G, Lanzara P (1990) Allozyme variation among and within eleven Orchis species (fam. Orchidaceae), with special reference to hybridizing aptitude. Genetica 81:143–150
Shen J, Ding XY, Liu DY, Ding G, He J, Li XX, Tang F, Chu BH (2006) Intersimple sequence repeats (ISSR) molecular fingerprinting markers for authenticating populations of Dendrobium officinale Kimura et Migo. Biol Pharm Bull 29:420–422
Su H, Yang Y (2006) State quo of Dendrobium spp. resources of Nabanhe Nature Reserve and countermeasures for protection. For Invent Plann 31:100–102
Sun YY, Li K, Li CR, Duan ML, Su JK (2006) Current situation and development countermeasures of Dendrobium spp. industry for medicinal purpose of Yunnan province. For Invent Plann 31:45–47
Swensen SM, Allan GJ, Howe M, Elisens WJ, Junak SA, Rieseberg LH (1995) Genetic analysis of the endangered island endemic Malacothamnus fasciculatus (Nutt.) Greene var. nesioticus (Rob.) Kearn. (Malvaceae). Conserv Biol 9:404–415
The Pharmacopoeia Commission of PRC (2000) Pharmacopoeia of the People’s Republic of China. Chemical Industry Press, Beijing
Wang S, Xie Y (2004) China species red list, vol 1. Higher Education Press, Beijing
Wong KC, Sun M (1999) Reproductive biology and conservation genetics of Goodyera procera (Orchidaceae). Amer J Bot 86:1406–1413
Wright S (1951) The genetical structure of populations. Ann Eugenet 15:323–354
Wu ZY (2003) Flora Yunnanica (Tomus 14). Science Press, Beijing
Wu HF, Li ZZ, Huang HW (2006) Genetic differentiation among natural populations of Gastrodia elata (Orchidaceae) in Hubei and germplasm assessment of the cultivated populations. Biodivers Sci 14:315–326
Yeh FC, Yang RC, Boyle T (1999) POPGENE. Microsoft Windows-based freeware for population genetic analysis. Release 1.31. University of Alberta, Edmonton
Zawko G, Krauss SL, Dixon KW, Sivasithamparam K (2001) Conservation genetics of the rare and endangered Leucopogon obtectus (Ericaceae). Molec Ecol 10:2389–2396
Zhang CF, Zhang SY (1993) Flora of Zhejiang (Tomus 7). Zhejiang Science and Technology Publishing House, Hangzhou
Zhang M, Xia HX, Zhu LQ, Zhang YJ (2000) Research progress of Dendrobium tissue culture. China J Chin Materia Med 6:323–326
Zhang ZY, Chen YY, Li DZ (2005) Detection of low genetic variation in a critically endangered Chinese pine, Pinus squamata, using RAPD and ISSR markers. Biochem Genet 43:239–249
Acknowledgments
The authors thank the National Natural Science Foundation of China (No. 30370144) for financial support. We are also grateful to Prof. Song Ge for his assistance with softwares, Mr. Ye Xu for his help during figure drawing.
Author information
Authors and Affiliations
Corresponding author
Additional information
Ge Ding and Daizhen Zhang made equal contribution to this work.
Rights and permissions
About this article
Cite this article
Ding, G., Zhang, D., Ding, X. et al. Genetic variation and conservation of the endangered Chinese endemic herb Dendrobium officinale based on SRAP analysis. Plant Syst Evol 276, 149–156 (2008). https://doi.org/10.1007/s00606-008-0068-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00606-008-0068-1