Skip to main content
Log in

Recollections of a scientific journey published in human genetics: from chromosome territories to interphase cytogenetics and comparative genome hybridization

  • Review Paper
  • Published:
Human Genetics Aims and scope Submit manuscript

Abstract

In line with the intentions of an issue celebrating the 50th anniversary of Human Genetics, we focus on a series of frequently cited studies published in this journal during the 1980s and 1990s. These studies have contributed to the rise of molecular cytogenetics. They yielded evidence that chromosomes occupy distinct territories in the mammalian cell nucleus, first obtained with laser-UV-microbeam experiments and thereafter with chromosome painting, and contributed to the development of interphase cytogenetics and comparative genome hybridization. We provide a personal account of experimental concepts, which were developed by us and others, and describe some of the unforeseeable turns and obstacles, which we had to overcome on the way towards an experimental realization. We conclude with a perspective on current developments and goals of molecular cytogenetics.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Bauman JG, Wiegant J, Borst P, van Duijn P (1980) A new method for fluorescence microscopical localization of specific DNA sequences by in situ hybridization of fluorochrome labelled RNA. Exp Cell Res 128(2):485–490

    Article  CAS  PubMed  Google Scholar 

  • Bentz M, Plesch A, Stilgenbauer S, Dohner H, Lichter P (1998) Minimal sizes of deletions detected by comparative genomic hybridization. Gen Chrom Cancer 21(2):172–175. doi:10.1002/(SICI)1098-2264(199802)21:2<172:AID-GCC14>3.0.CO;2-T

    Article  CAS  Google Scholar 

  • Bickmore WA, van Steensel B (2013) Genome architecture: domain organization of interphase chromosomes. Cell 152(6):1270–1284. doi:10.1016/j.cell.2013.02.001

    Article  CAS  PubMed  Google Scholar 

  • Blobel G (1985) Gene gating: a hypothesis. Proc Natl Acad Sci USA 82(24):8527–8529

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Bolzer A, Kreth G, Solovei I, Koehler D, Saracoglu K, Fauth C, Muller S, Eils R, Cremer C, Speicher MR, Cremer T (2005) Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol 3(5):e157. doi:10.1371/journal.pbio.0030157

    Article  PubMed Central  PubMed  Google Scholar 

  • Bornfleth H, Edelmann P, Zink D, Cremer T, Cremer C (1999) Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy. Biophys J 77(5):2871–2886. doi:10.1016/S0006-3495(99)77119-5

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Boyle AL, Lichter P, Ward DC (1990) Rapid analysis of mouse-hamster hybrid cell lines by in situ hybridization. Genomics 7(1):127–130. doi:10.1016/0888-7543(90)90529-4

    Article  CAS  PubMed  Google Scholar 

  • Cavalli G, Misteli T (2013) Functional implications of genome topology. Nat Struct Mol Biol 20(3):290–299. doi:10.1038/nsmb.2474

    Article  CAS  PubMed  Google Scholar 

  • Comings DE (1968) The rationale for an ordered arrangement of chromatin in the interphase nucleus. Am J Hum Genet 20(5):440–460

    CAS  PubMed Central  PubMed  Google Scholar 

  • Craig JM, Kraus J, Cremer T (1997) Removal of repetitive sequences from FISH probes using PCR-assisted affinity chromatography. Hum Genet 100(3–4):472–476

    Article  CAS  PubMed  Google Scholar 

  • Cremer C, Cremer T (1972) Verfahren zur Darstellung bzw. Modifikation von Objekt-Details, deren Abmessungen außerhalb der sichtbaren Wellenlängen liegen. (Procedure for the Imaging and modification of object details with dimensions below the range of visible wavelengths) Deutsches Patentamt. Offenlegungsschrift 2116521 (German Patent Application No. 2116521). Aktenzeichen: P 21 16 521.9. Anmeldetag: 5. April 1971. Offenlegungstag: 12. Oktober 1972: http://www.tlb.de/fileadmin/user_upload/sonstiges/Offenlegungsschrift_4_Pi_.pdf

  • Cremer C, Cremer T (1978) Considerations on a laser-scanning-microscope with high resolution and depth of field. Microsc Acta 81(1):31–44

    CAS  PubMed  Google Scholar 

  • Cremer C, Cremer T (1986) Induction of chromosome shattering by ultraviolet light and caffeine: the influence of different distributions of photolesions. Mutat Res 163(1):33–40

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Cremer C (2001) Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2(4):292–301

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Cremer C (2006a) Rise, fall and resurrection of chromosome territories: a historical perspective. Part I. The rise of chromosome territories. Eur J Histochem 50(3):161–176

    PubMed  Google Scholar 

  • Cremer T, Cremer C (2006b) Rise, fall and resurrection of chromosome territories: a historical perspective. Part II. Fall and resurrection of chromosome territories during the 1950s to 1980s. Part III. Chromosome territories and the functional nuclear architecture: experiments and models from the 1990s to the present. Eur J Histochem 50(4):223–272

    CAS  PubMed  Google Scholar 

  • Cremer T, Cremer M (2010) Chromosome territories. Cold Spring Harb Perspect Biol 2(3):a003889. doi:10.1101/cshperspect.a003889

    Article  PubMed Central  PubMed  Google Scholar 

  • Cremer C, Masters BR (2013) Resolution enhancement techniques in microscopy. Eur Phys J H 38(3):281–344

    Article  Google Scholar 

  • Cremer T, Dames W, Neuhoff V (1972) Micro disc electrophoresis and quantitative assay of glucose-6-phosphate dehydrogenase at the cellular level. Hoppe Seylers Z Physiol Chem 353(8):1317–1329

    Article  CAS  PubMed  Google Scholar 

  • Cremer C, Cremer T, Fukuda M, Nakanishi K (1980) Detection of laser-UV microirradiation-induced DNA photolesions by immunofluorescent staining. Hum Genet 54(1):107–110

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Cremer C, Schneider T, Baumann H, Hens L, Kirsch-Volders M (1982a) Analysis of chromosome positions in the interphase nucleus of Chinese hamster cells by laser-UV-microirradiation experiments. Hum Genet 62(3):201–209

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Cremer C, Baumann H, Luedtke EK, Sperling K, Teuber V, Zorn C (1982b) Rabl's model of the interphase chromosome arrangement tested in Chinese hamster cells by premature chromosome condensation and laser-UV-microbeam experiments. Hum Genet 60(1):46–56

    Article  CAS  PubMed  Google Scholar 

  • Cremer C, Gray JW, Ropers HH (1982c) Flow cytometric characterization of a Chinese hamster X man hybrid cell line retaining the human Y chromosome. Hum Genet 60(3):262–266

    Article  CAS  PubMed  Google Scholar 

  • Cremer C, Cremer T, Hens L, Baumann H, Cornelis JJ, Nakanishi K (1983) UV micro-irradiation of the Chinese hamster cell nucleus and caffeine post-treatment. Immunocytochemical localization of DNA photolesions in cells with partial and generalized chromosome shattering. Mutat Res 107(2):465–476

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Baumann H, Nakanishi K, Cremer C (1984a) Correlation between interphase and metaphase chromosome arrangements as studied by laser-uv-microbeam experiments. Chromosomes Today 8:203–212

    Article  Google Scholar 

  • Cremer C, Rappold G, Gray JW, Muller CR, Ropers HH (1984b) Preparative dual-beam sorting of the human Y chromosome and in situ hybridization of cloned DNA probes. Cytometry 5(6):572–579. doi:10.1002/cyto.990050604

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Landegent J, Bruckner A, Scholl HP, Schardin M, Hager HD, Devilee P, Pearson P, van der Ploeg M (1986) Detection of chromosome aberrations in the human interphase nucleus by visualization of specific target DNAs with radioactive and non-radioactive in situ hybridization techniques: diagnosis of trisomy 18 with probe L1.84. Hum Genet 74(4):346–352

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Lichter P, Borden J, Ward DC, Manuelidis L (1988) Detection of chromosome aberrations in metaphase and interphase tumor cells by in situ hybridization using chromosome-specific library probes. Hum Genet 80(3):235–246

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Kurz A, Zirbel R, Dietzel S, Rinke B, Schrock E, Speicher MR, Mathieu U, Jauch A, Emmerich P, Scherthan H, Ried T, Cremer C, Lichter P (1993) Role of chromosome territories in the functional compartmentalization of the cell nucleus. Cold Spring Harb Symp Quant Biol 58:777–792

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Kreth G, Koester H, Fink RH, Heintzmann R, Cremer M, Solovei I, Zink D, Cremer C (2000) Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture. Crit Rev Eukaryot Gene Expr 10(2):179–212

    Article  CAS  PubMed  Google Scholar 

  • Cremer T, Cremer M, Dietzel S, Müller S, Solovei I, Fakan S (2006) Chromosome territories - a functional nuclear landscape. Curr Opin Cell Biol 18(3):307–316

    Google Scholar 

  • Dames W, Neuhoff V (1972) Microelectrophoretic separation and determination of single-cell dehydrogenases. Naturwissenschaften 59(3):126

    Article  CAS  PubMed  Google Scholar 

  • de Graaf CA, van Steensel B (2013) Chromatin organization: form to function. Curr Opin Genet Dev 23(2):185–190. doi:10.1016/j.gde.2012.11.011

    Article  PubMed  Google Scholar 

  • Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485(7398):376–380. doi:10.1038/nature11082

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • du Manoir S, Speicher MR, Joos S, Schröck E, Popp S, Döhner H, Kovacs E, Robert-Nicout M, Lichter P, Cremer T (1993) Detection of complete and partial chromosome gain and losses by comparative genomic in situ hybridization. Hum Genet 90:590–610

    Article  PubMed  Google Scholar 

  • du Manoir S, Schrock E, Bentz M, Speicher MR, Joos S, Ried T, Lichter P, Cremer T (1995) Quantitative analysis of comparative genomic hybridization. Cytometry 19(1):27–41. doi:10.1002/cyto.990190105

    Article  PubMed  Google Scholar 

  • Gall JG, Pardue ML (1969) Formation and detection of RNA–DNA hybrid molecules in cytological preparations. Proc Natl Acad Sci USA 63(2):378–383

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Gibcus JH, Dekker J (2013) The hierarchy of the 3D genome. Mol Cell 49(5):773–782. doi:10.1016/j.molcel.2013.02.011

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Hens L, Baumann H, Cremer T, Sutter A, Cornelis JJ, Cremer C (1983) Immunocytochemical localization of chromatin regions UV-microirradiated in S phase or anaphase. Evidence for a territorial organization of chromosomes during cell cycle of cultured Chinese hamster cells. Exp Cell Res 149(1):257–269

    Article  CAS  PubMed  Google Scholar 

  • Hubner B, Strickfaden H, Muller S, Cremer M, Cremer T (2009) Chromosome shattering: a mitotic catastrophe due to chromosome condensation failure. Eur Biophys J 38(6):729–747. doi:10.1007/s00249-009-0496-z

    Article  CAS  PubMed  Google Scholar 

  • Hubner B, Cremer T, Neumann J (2013) Correlative microscopy of individual cells: sequential application of microscopic systems with increasing resolution to study the nuclear landscape. Methods Mol Biol 1042:299–336

    Article  PubMed  Google Scholar 

  • Hudson T et al (2010) International network of cancer genome projects. Nature 464(7291):993–998

    Article  CAS  PubMed  Google Scholar 

  • Jauch A, Daumer C, Lichter P, Murken J, Schroeder-Kurth T, Cremer T (1990) Chromosomal in situ suppression hybridization of human gonosomes and autosomes and its use in clinical cytogenetics. Hum Genet 85(2):145–150

    Article  CAS  PubMed  Google Scholar 

  • Jauch A, Wienberg J, Stanyon R, Arnold N, Tofanelli S, Ishida T, Cremer T (1992) Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting. Proc Natl Acad Sci USA 89(18):8611–8615

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • John HA, Birnstiel ML, Jones KW (1969) RNA–DNA hybrids at the cytological level. Nature 223(5206):582–587

    Article  CAS  PubMed  Google Scholar 

  • Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258(5083):818–821

    Article  CAS  PubMed  Google Scholar 

  • Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T (2007) Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat Rev Genet 8(2):104–115

    Article  CAS  PubMed  Google Scholar 

  • Landegent JE, in de Jansen Wal N, Dirks RW, Baao F, van der Ploeg M (1987) Use of whole cosmid cloned genomic sequences for chromosomal localization by non-radioactive in situ hybridization. Hum Genet 77(4):366–370

    Article  CAS  PubMed  Google Scholar 

  • Langer PR, Waldrop AA, Ward DC (1981) Enzymatic synthesis of biotin-labeled polynucleotides: novel nucleic acid affinity probes. Proc Natl Acad Sci USA 78(11):6633–6637

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lengauer C, Riethman HC, Speicher MR, Taniwaki M, Konecki D, Green ED, Becher R, Olson MV, Cremer T (1992) Metaphase and interphase cytogenetics with Alu-PCR-amplified yeast artificial chromosome clones containing the BCR gene and the protooncogenes c-raf-1, c-fms, and cerbB-2. Cancer Res 52(9):2590–2596

    CAS  PubMed  Google Scholar 

  • Lichter P, Cremer T, Borden J, Manuelidis L, Ward DC (1988a) Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA libraries. Hum Genet 80(3):224–234

    Article  CAS  PubMed  Google Scholar 

  • Lichter P, Cremer T, Tang CJ, Watkins PC, Manuelidis L, Ward DC (1988b) Rapid detection of human chromosome 21 aberrations by in situ hybridization. Proc Natl Acad Sci USA 85(24):9664–9668

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lichter P, Tang CJ, Call K, Hermanson G, Evans GA, Housman D, Ward DC (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247(4938):64–69

    Article  CAS  PubMed  Google Scholar 

  • Lohs-Schardin M, Cremer C, Nusslein-Volhard C (1979a) A fate map for the larval epidermis of Drosophila melanogaster: localized cuticle defects following irradiation of the blastoderm with an ultraviolet laser microbeam. Dev Biol 73(2):239–255

    Article  CAS  PubMed  Google Scholar 

  • Lohs-Schardin M, Sander K, Cremer C, Cremer T, Zorn C (1979b) Localized ultraviolet laser microbeam irradiation of early Drosophila embryos: fate maps based on location and frequency of adult defects. Dev Biol 68(2):533–545. doi:10.1016/0012-1606(79)90224-0

    Article  CAS  PubMed  Google Scholar 

  • Manuelidis L (1985) Individual interphase chromosome domains revealed by in situ hybridization. Hum Genet 71(4):288–293

    Article  CAS  PubMed  Google Scholar 

  • Manuelidis L, Ward DC (1984) Chromosomal and nuclear distribution of the HindIII 1.9-kb human DNA repeat segment. Chromosoma 91(1):28–38

    Article  CAS  PubMed  Google Scholar 

  • Manuelidis L, Langer-Safer PR, Ward DC (1982) High-resolution mapping of satellite DNA using biotin-labeled DNA probes. J Cell Biol 95(2 Pt 1):619–625

    Article  CAS  PubMed  Google Scholar 

  • Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C, Cremer T (2010) Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. Cold Spring Harb Symp Quant Biol 75:475–492. doi:10.1101/sqb.2010.75.042

    Article  CAS  PubMed  Google Scholar 

  • Markaki Y, Smeets D, Fiedler S, Schmid VJ, Schermelleh L, Cremer T, Cremer M (2012) The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives for studies of nuclear architecture. Bio Ess 34(5):412–426. doi:10.1002/bies.201100176

    Google Scholar 

  • Meaburn KJ, Misteli T (2007) Cell biology: chromosome territories. Nature 445(7126):379–781. doi:10.1038/445379a

    Article  CAS  PubMed  Google Scholar 

  • Muller CR, Davies KE, Cremer C, Rappold G, Gray JW, Ropers HH (1983) Cloning of genomic sequences from the human Y chromosome after purification by dual beam flow sorting. Hum Genet 64(2):110–115

    Article  CAS  PubMed  Google Scholar 

  • Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P (2013) Single-cell Hi–C reveals cell-to-cell variability in chromosome structure. Nature 502(7469):59–64. doi:10.1038/nature12593

    Article  CAS  PubMed  Google Scholar 

  • Newhart A, Janicki SM (2014) Seeing is believing: visualizing transcriptional dynamics in single cells. J Cell Physiol 229(3):259–265. doi:10.1002/jcp.24445

    Article  CAS  PubMed  Google Scholar 

  • Nusslein-Volhard C, Lohs-Schardin M, Sander K, Cremer C (1980) A dorso-ventral shift of embryonic primordia in a new maternal-effect mutant of Drosophila. Nature 283(5746):474–476

    Article  CAS  PubMed  Google Scholar 

  • Pardue ML, Gall JG (1969) Molecular hybridization of radioactive DNA to the DNA of cytological preparations. Proc Natl Acad Sci USA 64(2):600–604

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Pinkel D, Straume T, Gray JW (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci USA 83(9):2934–2938

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Pinkel D, Landegent J, Collins C, Fuscoe J, Segraves R, Lucas J, Gray J (1988) Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocations of chromosome 4. Proc Natl Acad Sci USA 85(23):9138–9142

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG (1998) High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 20(2):207–211. doi:10.1038/2524

    Article  CAS  PubMed  Google Scholar 

  • Popp S, Jauch A, Schindler D, Speicher MR, Lengauer C, Donis-Keller H, Riethman HC, Cremer T (1993) A strategy for the characterization of minute chromosome rearrangements using multiple color fluorescence in situ hybridization with chromosome-specific DNA libraries and YAC clones. Hum Genet 92(6):527–532

    Article  CAS  PubMed  Google Scholar 

  • Rappold GA, Cremer T, Hager HD, Davies KE, Muller CR, Yang T (1984) Sex chromosome positions in human interphase nuclei as studied by in situ hybridization with chromosome specific DNA probes. Hum Genet 67(3):317–325

    Article  CAS  PubMed  Google Scholar 

  • Renz M (2013) Fluorescence microscopy-a historical and technical perspective. Cytometry A 83(9):767–779. doi:10.1002/cyto.a.22295

    Article  PubMed  Google Scholar 

  • Ried T, Mahler V, Vogt P, Blonden L, van Ommen GJ, Cremer T, Cremer M (1990) Direct carrier detection by in situ suppression hybridization with cosmid clones of the Duchenne/Becker muscular dystrophy locus. Hum Genet 85(6):581–586

    Article  CAS  PubMed  Google Scholar 

  • Ried T, Just KE, Holtgreve-Grez H, du Manoir S, Speicher MR, Schrock E, Latham C, Blegen H, Zetterberg A, Cremer T (1995) Comparative genomic hybridization of formalin-fixed, paraffin-embedded breast tumors reveals different patterns of chromosomal gains and losses in fibroadenomas and diploid and aneuploid carcinomas. Cancer Res 55(22):5415–5423

    CAS  PubMed  Google Scholar 

  • Rouquette J, Cremer C, Cremer T, Fakan S (2010) Functional nuclear architecture studied by microscopy: present and future. Int Rev Cell Mol Biol 282:1–90. doi:10.1016/S1937-6448(10)82001-5

    Article  CAS  PubMed  Google Scholar 

  • Rudkin GT, Stollar BD (1977) High resolution detection of DNA–RNA hybrids in situ by indirect immunofluorescence. Nature 265(5593):472–473

    Article  CAS  PubMed  Google Scholar 

  • Schardin M, Cremer T, Hager HD, Lang M (1985) Specific staining of human chromosomes in Chinese Hamster x man hybrid cell lines demonstrates interphase chromosome territories. Hum Genet 71:281–287

    Article  CAS  PubMed  Google Scholar 

  • Schermelleh L, Carlton PM, Haase S, Shao L, Winoto L, Kner P, Burke B, Cardoso MC, Agard DA, Gustafsson MG, Leonhardt H, Sedat JW (2008) Sub-diffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science 320(5881):1332–1336. doi:320/5881/133210.1126/science.1156947

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Scherthan H, Cremer T, Arnason U, Weier HU, Lima-de-Faria A, Fronicke L (1994) Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat Genet 6(4):342–347. doi:10.1038/ng0494-342

    Article  CAS  PubMed  Google Scholar 

  • Schrock E, du Manoir S, Veldman T, Schoell B, Wienberg J, Ferguson-Smith MA, Ning Y, Ledbetter DH, Bar-Am I, Soenksen D, Garini Y, Ried T (1996) Multicolor spectral karyotyping of human chromosomes. Science 273(5274):494–497

    Article  CAS  PubMed  Google Scholar 

  • Solinas-Toldo S, Lampel S, Stilgenbauer S, Nickolenko J, Benner A, Dohner H, Cremer T, Lichter P (1997) Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Gen Chrom Cancer 20(4):399–407

    Article  CAS  Google Scholar 

  • Speicher MR, du Manoir S, Schrock E, Holtgreve-Grez H, Schoell B, Lengauer C, Cremer T, Ried T (1993) Molecular cytogenetic analysis of formalin-fixed, paraffin-embedded solid tumors by comparative genomic hybridization after universal DNA-amplification. Hum Mol Genet 2(11):1907–1914

    Article  CAS  PubMed  Google Scholar 

  • Speicher MR, Jauch A, Walt H, du Manoir S, Ried T, Jochum W, Sulser T, Cremer T (1995) Correlation of microscopic phenotype with genotype in a formalin-fixed, paraffin-embedded testicular germ cell tumor with universal DNA amplification, comparative genomic hybridization, and interphase cytogenetics. Am J Pathol 146(6):1332–1340

    CAS  PubMed Central  PubMed  Google Scholar 

  • Speicher MR, Gwyn Ballard S, Ward DC (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12(4):368–375. doi:10.1038/ng0496-368

    Article  CAS  PubMed  Google Scholar 

  • Strickfaden H, Zunhammer A, van Koningsbruggen S, Kohler D, Cremer T (2010) 4D chromatin dynamics in cycling cells: Theodor Boveri's hypotheses revisited. Nucleus 1(3):284–297. doi:10.4161/nucl.1.3.11969

    Article  PubMed Central  PubMed  Google Scholar 

  • Tanabe H, Muller S, Neusser M, von Hase J, Calcagno E, Cremer M, Solovei I, Cremer C, Cremer T (2002) Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates. Proc Natl Acad Sci USA 99(7):4424–4429

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Tocharoentanaphol C, Cremer M, Schrock E, Blonden L, Kilian K, Cremer T, Ried T (1994) Multicolor fluorescence in situ hybridization on metaphase chromosomes and interphase Halo-preparations using cosmid and YAC clones for the simultaneous high resolution mapping of deletions in the dystrophin gene. Hum Genet 93(3):229–235

    Article  CAS  PubMed  Google Scholar 

  • Tsukamoto T, Hashiguchi N, Janicki SM, Tumbar T, Belmont AS, Spector DL (2000) Visualization of gene activity in living cells. Nat Cell Biol 2(12):871–878

    Article  CAS  PubMed  Google Scholar 

  • van der Ploeg M (2000) Cytochemical nucleic acid research during the twentieth century. Eur J Histochem 44:7–42

    PubMed  Google Scholar 

  • Vogel F, Schroeder TM (1974) The internal order of the interphase nucleus. Humangenetik 25(4):265–297

    Article  CAS  PubMed  Google Scholar 

  • Walter J, Schermelleh L, Cremer M, Tashiro S, Cremer T (2003) Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages. J Cell Biol 160(5):685–697

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Wienberg J (2004) The evolution of eutherian chromosomes. Curr Opin Genet Dev 14(6):657–666. doi:10.1016/j.gde.2004.10.001

    Article  CAS  PubMed  Google Scholar 

  • Zink D, Cremer T, Saffrich R, Fischer R, Trendelenburg MF, Ansorge W, Stelzer EH (1998) Structure and dynamics of human interphase chromosome territories in vivo. Hum Genet 102(2):241–251

    Article  CAS  PubMed  Google Scholar 

  • Zorn C, Cremer T, Cremer C, Zimmer J (1976) Laser UV microirradiation of interphase nuclei and post-treatment with caffeine. A new approach to establish the arrangement of interphase chromosomes. Hum Genet 35(1):83–89

    Article  CAS  PubMed  Google Scholar 

  • Zorn C, Cremer C, Cremer T, Zimmer J (1979) Unscheduled DNA synthesis after partial UV irradiation of the cell nucleus. Distribution in interphase and metaphase. Exp Cell Res 124(1):111–119

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

Our scientific journey (and our careers) would have failed without the essential ideas, the experimental skills and the continuous support of colleagues and friends. The support of Winfried Krone, Ulrich Wolf and Helmut Baitsch was essential to form a little laser UV-microbeam research group in the early 1970s at the Institute of Anthropology and Human Genetics of the University of Freiburg i. Br.. TC and CC wish to thank, in particular, Christian Zorn and Jürgen Zimmer for their invaluable contributions to our early UV-microbeam studies of nuclear architecture. TC is indebted to his mentor Friedrich Vogel, director of the Institute of Human Genetics and Anthropology of the University of Heidelberg from 1962 to 1993, for his unfailing support in critical times, and to Traute Schroeder-Kurth, for the opportunity to establish his own laboratory within the Institute’s Divison of Cytogenetics directed by her. Opportunities to work as guest researchers in laboratories providing conceptual and experimental expertise in cutting-edge technologies mark turning points in our scientific endeavors. CC thanks Marvin A. van Dilla and Joe W. Gray for the opportunity to work with them at the Biomedical Sciences Division of the Lawrence Livermore National Laboratories on the sorting of the human Y chromosome. TC and PL greatly acknowledge support from Laura Manuelidis and David C. Ward. Chromosome painting and the direct demonstration of chromosome territories were achieved together with them in their laboratories at Yale University. In addition, TC thanks Michael W. Berns (University of California, Irvine), Wolfgang Hennig and Peter H. Vogt (then University of Nijmegen), Mels van der Ploeg (University of Leiden), Maynard V. Olson and Harold C. Riethman (then Washington University, St. Louis) for making it possible to learn and perform bench work in their laboratories. Interphase cytogenetics was introduced during the 1980s in TC’s Heidelberg laboratory with support from Peter Pearson, Mels van der Ploeg and their co-workers and essential, experimental contributions (in alphabetical order) from Marion Cremer, Patricia Emmerich, Anna Jauch, Christoph Lengauer, Susanne Popp, Gudrun Rappold and Margit Schardin. The application of chromosome painting as a tool to study chromosomal rearrangements during evolution was initiated by Johannes Wienberg. Daniela Zink performed the first studies of chromosome territories in living cells. The concept of CGH was realized and applied to tumor samples in the TC and PL laboratories with the help of numerous colleagues, including (again in alphabetical order) Stanislas du Manoir, Stefan Joos, Thomas Ried, Harry Scherthan, Evelin Schröck, Michael Speicher and Ruthhild Weber. A first realization of the concept of array CGH (or matrix-based CGH as we originally called this method) was achieved in the laboratory of PL with major impact from Sabina Solinas-Toldo and colleagues. Finally, we wish to thank the Deutsche Forschungsgemeinschaft (DFG), who supported our work with fellowships and grants. Walther Klofat represented for us the good spirit of the DFG in person. Excerpts cited from grant applications, letters and unpublished manuscripts written in German were translated in English from TC.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thomas Cremer.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Cremer, T., Cremer, C. & Lichter, P. Recollections of a scientific journey published in human genetics: from chromosome territories to interphase cytogenetics and comparative genome hybridization. Hum Genet 133, 403–416 (2014). https://doi.org/10.1007/s00439-014-1425-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00439-014-1425-5

Keywords

Navigation