Abstract
Main conclusion
Maize 1,491 small secreted peptides were identified, which were classified according to the character of peptide sequences. Partial SSP gene expressions in reproductive tissues were determined by qRT-PCR.
Small secreted peptides (SSPs) are important cell–cell communication messengers in plants. Most information on plant SSPs come from Arabidopsis thaliana and Oryza sativa, while little is known about the SSPs of other grass species such as maize (Zea mays). In this study, we identified 1,491 SSP genes from maize genomic sequences. These putative SSP genes were distributed throughout the ten maize chromosomes. Among them, 611 SSPs were classified into 198 superfamilies according to their conserved domains, and 725 SSPs with four or more cysteines at their C-termini shared similar cysteine arrangements with their counterparts in other plant species. Moreover, the SSPs requiring post-translational modification, as well as defensin-like (DEFL) proteins, were identified. Further, the expression levels of 110 SSP genes were analyzed in reproductive tissues, including male flower, pollen, silk, and ovary. Most of the genes encoding basal-layer antifungal peptide-like, small coat proteins-like, thioredoxin-like proteins, γ-thionins-like, and DEFL proteins showed high expression levels in the ovary and male flower compared with their levels in silk and mature pollen. The rapid alkalinization factor-like genes were highly expressed only in the mature ovary and mature pollen, and pollen Ole e 1-like genes showed low expression in silk. The results of this study provide basic information for further analysis of SSP functions in the reproductive process of maize.
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Abbreviations
- AAI-LTSS:
-
Alpha amylase inhibitor-lipid transfer and seed storage proteins domain
- BAP:
-
Basal layer antifungal peptide
- BBI:
-
Bowman–Birk type proteinase inhibitor
- CEP:
-
C-terminally encoded peptide
- CLE:
-
CLAVATA3/ESR-related peptide
- CLEL:
-
CLE-like
- CLV:
-
CLAVATA
- CRP:
-
Cysteine-rich peptide
- Cu bind-like:
-
Copper-binding protein-like protein
- DEFLs:
-
Defensin-like protein
- Dirigent:
-
Dirigent-like protein
- DPBB:
-
Double psi beta-barrel structure
- EPF:
-
Epidermal patterning factor
- GASA:
-
Gibberellin regulated cysteine rich protein
- GLV:
-
GOLVEN
- GO:
-
Gene ontology analysis
- HDEL:
-
His-Asp-Glu-Leu sequence
- HypSys:
-
Hydroxyproline-rich systemin
- IDA:
-
Inflorescence deficient in abscission
- KDEL:
-
Lys-Asp-Glu-Leu sequence
- LRRNT:
-
Leucine rich repeat N-terminal domain
- ORF:
-
Open reading frame
- PEP:
-
Plant elicitor peptide
- PMEI:
-
Pectin methylesterase inhibitor
- PNP:
-
Plant natriuretic peptide
- Pollen Ole e 1:
-
Pollen proteins Ole e 1-like protein
- PSK:
-
Phytosulfokine
- PSY:
-
Peptide containing sulfated tyrosine
- qRT-PCR:
-
Quantitative real-time PCR
- RALF:
-
Rapid alkalinization factor
- RGF:
-
Root meristem growth factor
- SEA:
-
Singular enrichment analysis
- SCP:
-
Small coat protein
- SCR:
-
S-locus cysteine-rich protein
- SP11:
-
S-locus protein 11
- SSP:
-
Small secreted peptide
- TDIF:
-
Tracheary element differentiation inhibitory factor
- TPD:
-
Tapetum determinant
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Acknowledgments
This study is funded by the Major Research Plan from the Ministry of Science and Technology of China (No. 2013CB945100) and the National Natural Science Foundation of China (No. 31170293 and No. 31270358).
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Y. L. Li and X. R. Dai have contribute equally to this work.
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Li, Y.L., Dai, X.R., Yue, X. et al. Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. Planta 240, 713–728 (2014). https://doi.org/10.1007/s00425-014-2123-1
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DOI: https://doi.org/10.1007/s00425-014-2123-1