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Dampened X-chromosomes in human pluripotent stem cells: dampening or erasure of X-upregulation?

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Abstract

The recent report of X-chromosome dampening in human preimplantation embryos remains controversial. Subsequently, Sahakyan et al. found evidence of X-chromosome dampening in human naïve pluripotent stem cells (hPSCs) as well. Here, we discuss whether X-dampening reported in hPSCs truly reflects the dampening of X-chromosomes or it is a consequence of the erasure of X-chromosome upregulation.

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References

  • De Mello JCM, Fernandes GR, Vibranovski MD, Pereira LV (2017) Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. Sci Rep 7:1–12

    Google Scholar 

  • Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR et al (2011) Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nat Genet 43:1179–1185

    CAS  PubMed  PubMed Central  Google Scholar 

  • Larsson AJM, Coucoravas C, Sandberg R, and Reinius B (2019) Transcriptional kinetics of X-chromosome upregulation. bioRxiv. https://doi.org/10.1101/540104

  • Lin H, Halsall JA, Antczak P, O’Neill LP, Falciani F, Turner BM (2011) Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno’s hypothesis. Nat Genet 43:1169–1170

    CAS  PubMed  Google Scholar 

  • Lyon MF (1961) Gene action in the X-chromosome of the mouse (Mus musculus L.). Nature 190:372–373

    CAS  PubMed  Google Scholar 

  • Ohno S (1967) Sex chromosomes and sex-linked genes. Springer-Verlag, Berlin, Heidelberg, New York

  • Okamoto I, Patrat C, Thépot D, Peynot N, Fauque P, Daniel N, Diabangouaya P, Wolf JP, Renard JP, Duranthon V et al (2011) Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development. Nature 472:370–374

    CAS  PubMed  Google Scholar 

  • Petropoulos S, Deng Q, Panula SP, Codeluppi S, Reyes AP, Linnarsson S, Sandberg R, Lanner F (2016) Single-cell RNA-seq reveals lineage and X-chromosome dynamics in human preimplantation embryos. Cell 165:1012–1026

    CAS  PubMed  PubMed Central  Google Scholar 

  • Sahakyan A, Kim R, Chronis C, Sabri S, Bonora G, Theunissen TW, Kuoy E, Langerman J, Clark AT, Jaenisch R et al (2017) Human naive pluripotent stem cells model X chromosome dampening and X inactivation. Cell Stem Cell 20:87–101

    CAS  PubMed  Google Scholar 

  • Theunissen TW, Friedli M, He Y, Planet E, O’Neil RC, Markoulaki S, Pontis J, Wang H, Iouranova A, Imbeault M et al (2016) Molecular criteria for defining the naive human pluripotent state. Cell Stem Cell 19:502–515

    CAS  PubMed  PubMed Central  Google Scholar 

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Funding

The study was financially supported by the IISC-MHRD Start-Up Grant, the Ramalingaswamy-DBT Fellowship to SG, and the IISC-DBT Partnership Program.

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SG conceptualized the manuscript. SG, HK, and PRV wrote, edited, and proofread the manuscript. PRV illustrated the artwork.

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Correspondence to Srimonta Gayen.

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Kaur, H., RV, P. & Gayen, S. Dampened X-chromosomes in human pluripotent stem cells: dampening or erasure of X-upregulation?. Chromosoma 129, 111–113 (2020). https://doi.org/10.1007/s00412-019-00717-5

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  • DOI: https://doi.org/10.1007/s00412-019-00717-5

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