Skip to main content
Log in

Directed evolution of leucine dehydrogenase for improved efficiency of l-tert-leucine synthesis

  • Biotechnologically relevant enzymes and proteins
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

l-tert-Leucine and its derivatives are used as synthetic building blocks for pharmaceutical active ingredients, chiral auxiliaries, and ligands. Leucine dehydrogenase (LeuDH) is frequently used to prepare l-tert-leucine from the α-keto acid precursor trimethylpyruvate (TMP). In this study, a high-throughput screening method for the l-tert-leucine synthesis reaction based on a spectrophotometric approach was developed. Directed evolution strategy was applied to engineer LeuDH from Lysinibacillus sphaericus for improved efficiency of l-tert-leucine synthesis. After two rounds of random mutagenesis, the specific activity of LeuDH on the substrate TMP was enhanced by more than two-fold, compared with that of the wild-type enzyme, while the activity towards its natural substrate, leucine, decreased. The catalytic efficiencies (k cat/K m) of the best mutant enzyme, H6, on substrates TMP and NADH were all enhanced by more than five-fold as compared with that of the wild-type enzyme. The efficiency of l-tert-leucine synthesis by mutant H6 was significantly improved. A productivity of 1170 g/l/day was achieved for the mutant enzyme H6, compared with 666 g/l/day for the wild-type enzyme.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Ansorge-Schumacher MB, Slusarczyk H, Schumers J, Hirtz D (2006) Directed evolution of formate dehydrogenase from Candida boidinii for improved stability during entrapment in polyacrylamide. FEBS J 273:3938–3945

    Article  CAS  PubMed  Google Scholar 

  • Ariga N (1972) Thin-layer chromatography of keto acid 2,4-dinitrophenylhydrazones. Anal Biochem 49:436–441

    Article  CAS  PubMed  Google Scholar 

  • Baik SH, Ide T, Yoshida H, Kagami O, Harayama S (2003) Significantly enhanced stability of glucose dehydrogenase by directed evolution. Appl Microbiol Biotechnol 61:329–335

    Article  CAS  PubMed  Google Scholar 

  • Baker PJ, Turnbull AP, Sedelnikova SE, Stillman TJ, Rice DW (1995) A role for quaternary structure in the substrate-specificity of leucine dehydrogenase. Structure 3:693–705

    Article  CAS  PubMed  Google Scholar 

  • Bhushan R, Bruckner H (2004) Marfey’s reagent for chiral amino acid analysis: a review. Amino Acids 27:231–247

    Article  CAS  PubMed  Google Scholar 

  • Carter JLL, Bekhouche M, Noiriel A, Blum LJ, Doumeche B (2014) Directed evolution of a formate dehydrogenase for increased tolerance to ionic liquids reveals a new site for increasing the stability. Chembiochem 15:2710–2718

    Article  CAS  PubMed  Google Scholar 

  • Chen S, Engel PC (2009) Efficient screening for new amino acid dehydrogenase activity: directed evolution of Bacillus sphaericus phenylalanine dehydrogenase towards activity with an unsaturated non-natural amino acid. J Biotechnol 142:127–134

    Article  CAS  PubMed  Google Scholar 

  • Dietrich JA, McKee AE, Keasling JD (2010) High-throughput metabolic engineering: advances in small-molecule screening and selection. Annu Rev Biochem 79:563–590

    Article  CAS  PubMed  Google Scholar 

  • Fassler A, Bold G, Capraro H-G, Lang M, Khanna SC (1997) Antivirally active heterocyclic azahexane derivatives. US patent US5849911 A.

  • He YC, Zhang DP, Tao ZC, Lu Y, Ding Y, Liu F, Zhu ZZ, Rui H, Zheng GW, Zhang X (2015) Improved biosynthesis of ethyl (S)-4-chloro-3-hydroxybutanoate by adding L-glutamine plus glycine instead of NAD in beta-cyclodextrinwater system. Bioresour Technol 182:98–102

  • Hess S, Gustafson KR, Milanowski DJ, Alvira E, Lipton MA, Pannell LK (2004) Chirality determination of unusual amino acids using precolumn derivatization and liquid chromatography-electrospray ionization mass spectrometry. J Chromatogr A 1035:211–219

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hong EY, Cha MH, Yun HD, Kim BG (2010) Asymmetric synthesis of l-tert-leucine and l-3-hydroxyadamantylglycine using branched chain aminotransferase. J MolCatal B Enzym 66:228–233

    Article  CAS  Google Scholar 

  • Hupert-Kocurek K, Banas A, Wojcieszynska D, Guzik U (2014) Directed evolution of microbial enzymes. Postepy Mikrobiologii 53:43–48

    CAS  Google Scholar 

  • Imamura C, Shigemori Y (2010) Enhancement of thermal stabilization of formaldehyde dehydrogenase from Pseudomonas putida by directed evolution. Biosci Biotechnol Biochem 74:1462–1465

    Article  CAS  PubMed  Google Scholar 

  • Johannes TW, Woodyer RD, Zhao H (2005) Directed evolution of a thermostable phosphite dehydrogenase for NAD(P)H regeneration. Appl Environ Microbiol 71:5728–5734

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Joshi S, Satyanarayana T (2015) In vitro engineering of microbial enzymes with multifarious applications: prospects and perspectives. Bioresour Technol 176:273–283

    Article  CAS  PubMed  Google Scholar 

  • Kataoka K, Tanizawa K (2003) Alteration of substrate specificity of leucine dehydrogenase by site-directed mutagenesis. J Mol Catal B Enzym 23:299–309

    Article  CAS  Google Scholar 

  • Kim JY, Lee YA, Wittmann C, Park JB (2013) Production of non-proteinogenic amino acids from α-keto acid precursors with recombinant Corynebacterium glutamicum. Biotechnol Bioeng 110:2846–2855

    Article  CAS  PubMed  Google Scholar 

  • Kragl U, Kruse W, Hummel W, Wandrey C (1996a) Enzyme engineering aspects of biocatalysis: cofactor regeneration as example. Biotechnol Bioeng 52:309–319

    Article  CAS  PubMed  Google Scholar 

  • Kragl U, VasicRacki D, Wandrey C (1996b) Continuous production of l-tert-leucine in series of two enzyme membrane reactors—modelling and computer simulation. Bioprocess Eng 14:291–297

    CAS  Google Scholar 

  • Laumen K, Kittelmann M, Ghisalba O (2002) Chemo-enzymatic approaches for the creation of novel chiral building blocks and reagents for pharmaceutical applications. J Mol Catal B Enzym 19:55–66

    Article  Google Scholar 

  • Li J, Pan J, Zhang J, Xu JH (2014) Stereoselective synthesis of l-tert-leucine by a newly cloned leucine dehydrogenase from Exiguobacterium sibiricum. J Mol Catal B Enzym 105:11–17

    Article  CAS  Google Scholar 

  • Liu WM, Ma HM, Luo JX, Shen WH, Xu X, Li S, Hu Y, Huang H (2014) Efficient synthesis of l-tert-leucine through reductive amination using leucine dehydrogenase and formate dehydrogenase coexpressed in recombinant E. coli. Biochem Eng J 91:204–209

    Article  CAS  Google Scholar 

  • Menzel A, Werner H, Altenbuchner J, Groger H (2004) From enzymes to “designer bugs” in reductive amination: a new process for the synthesis of l-tert-leucine using a whole cell-catalyst. Eng Life Sci 4:573–576

    Article  CAS  Google Scholar 

  • Oyobiki R, Kato T, Katayama M, Sugitani A, Watanabe T, Einaga Y, Matsumoto Y, Horisawa K, Doi N (2014) Toward high-throughput screening of NAD(P)-dependent oxidoreductases using boron-doped diamond microelectrodes and microfluidic devices. Anal Chem 86:9570–9575

    Article  CAS  PubMed  Google Scholar 

  • Phillips GJ, Park SK, Huber D (2000) High copy number plasmids compatible with commonly used cloning vectors. BioTechniques 28:400–402, 404, 406 passim.

  • Reitman S, Frankel S (1957) A colorimetric method for the determination of serum glutamic oxalacetic and glutamic pyruvic transaminases. Am J Clin Pathol 28:56–63

    Article  CAS  PubMed  Google Scholar 

  • Seo YM, Yun H (2011) Enzymatic synthesis of l-tert-leucine with branched chain aminotransferase. J Microbiol Biotechnol 21:1049–1052

    Article  CAS  PubMed  Google Scholar 

  • Solano DM, Hoyos P, Hernaiz MJ, Alcantara AR, Sanchez-Montero JM (2012) Industrial biotransformations in the synthesis of building blocks leading to enantiopure drugs. Bioresour Technol 115:196–207

    Article  Google Scholar 

  • Steffler F, Guterl JK, Sieber V (2013) Improvement of thermostable aldehyde dehydrogenase by directed evolution for application in synthetic cascade biomanufacturing. Enzym Microb Technol 53:307–314

    Article  CAS  Google Scholar 

  • Tracewell CA, Arnold FH (2009) Directed enzyme evolution: climbing fitness peaks one amino acid at a time. Curr Opin Chem Biol 13:3–9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Weinhandl K, Winkler M, Glieder A, Camattari A (2012) A novel multi-enzymatic high throughput assay for transaminase activity. Tetrahedron 68:7586–7590

    Article  CAS  Google Scholar 

  • Xu ZM, Singh J, Schwinden MD, Zheng B, Kissick TP, Patel B, Humora MJ, Quiroz F, Dong L, Hsieh DM, Heikes JE, Pudipeddi M, Lindrud MD, Srivastava SK, Kronenthal DR, Mueller RH (2002) Process research and development for an efficient synthesis of the HIV protease inhibitor BMS-232632. Org Process Res Dev 6:323–328

    Article  CAS  Google Scholar 

  • Zhao HM (2007) Directed evolution of novel protein functions. Biotechnol Bioeng 98:313–317

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the Ministry of Science and Technology of China Grant 2013CB734003 and the National Natural Science Foundation of China (Grant No. 21172095, 31160017, 21472234). We are grateful to Dr. Rongsheng Tao from Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, for providing us gene gdh from B. subtilis 168.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Shuang-Yan Tang.

Ethics declarations

Conflict of interest

The authors declare that they have no competing interests.

Additional information

Lin Zhu and Zhe Wu contributed equally to this work.

Electronic Supplementary Material

ESM 1

(PDF 676 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhu, L., Wu, Z., Jin, JM. et al. Directed evolution of leucine dehydrogenase for improved efficiency of l-tert-leucine synthesis. Appl Microbiol Biotechnol 100, 5805–5813 (2016). https://doi.org/10.1007/s00253-016-7371-5

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-016-7371-5

Keywords

Navigation