Skip to main content
Log in

Investigation of halogenation during the biosynthesis of ramoplanin in Actinoplanes sp. ATCC33076

  • Applied genetics and molecular biotechnology
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Ramoplanin and enduracidin are lipopeptide antibiotics effective against Gram-positive pathogens, which share close similarity in structure and biosynthetic pathway. Both compounds have chlorine atoms attached to 4-hydroxyphenylglycine (Hpg) but with different chlorinating sites and levels. Here, to probe the factor affecting the site and level of halogenation, gene inactivation and heterologous expression were carried out in Actinoplanes sp. ATCC33076 by homologous recombination. Metabolite analysis confirmed that ram20 encodes the only halogenase in ramoplanin biosynthetic pathway, and enduracidin halogenase End30 could heterologously complement the ram20-deficient mutant. Additionally, the mannosyltransferase-deficient mutant produces a dichlorinated ramoplanin aglycone with the halogenation site at Hpg13. This study has refined our understanding of how halogenation occurs in ramoplanin biosynthetic pathway, and lays the foundation for further exploitation of ramoplanin and enduracidin halogenase in combinatorial biosynthesis.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Bierman M, Logan R, O’Brien K, Seno ET, Nagaraja Rao R, Schoner BE (1992) Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116(1):43–49

    Article  PubMed  CAS  Google Scholar 

  • Bister B, Bischoff D, Nicholson GJ, Stockert S, Wink J, Brunati C, Donadio S, Pelzer S, Wohlleben W, Süssmuth RD (2003) Bromobalhimycin and chlorobromobalhimycins—illuminating the potential of halogenases in glycopeptide antibiotic biosyntheses. Chembiochem 4(7):658–662. doi:10.1002/cbic.200300619

    Article  PubMed  CAS  Google Scholar 

  • Butler A, Sandy M (2009) Mechanistic considerations of halogenating enzymes. Nature 460(7257):848–854

    Article  PubMed  CAS  Google Scholar 

  • Chen J-S, Wang Y-X, Shao L, Pan H-X, Li J-A, Lin H-M, Dong X-J, Chen D-J (2013) Functional identification of the gene encoding the enzyme involved in mannosylation in ramoplanin biosynthesis in Actinoplanes sp. Biotechnol Lett 35(9):1501–1508. doi:10.1007/s10529-013-1233-3

    Article  PubMed  CAS  Google Scholar 

  • Dorrestein PC, Yeh E, Garneau-Tsodikova S, Kelleher NL, Walsh CT (2005) Dichlorination of a pyrrolyl-S-carrier protein by FADH2-dependent halogenase PltA during pyoluteorin biosynthesis. Proc Natl Acad Sci U S A 102(39):13843–13848

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Eustáquio AS, Gust B, Luft T, Li S-M, Chater KF, Heide L (2003) Clorobiocin biosynthesis in Streptomyces: identification of the halogenase and generation of structural analogs. Chem Biol 10(3):279–288

    Article  PubMed  Google Scholar 

  • Finegold SM, John SS, Vu AW, Li CM, Molitoris D, Song Y, Liu C, Wexler HM (2004) In vitro activity of ramoplanin and comparator drugs against anaerobic intestinal bacteria from the perspective of potential utility in pathology involving bowel flora. Anaerobe 10(4):205–211. doi:10.1016/j.anaerobe.2004.04.003

    Article  PubMed  CAS  Google Scholar 

  • Foulston LC, Bibb MJ (2010) Microbisporicin gene cluster reveals unusual features of lantibiotic biosynthesis in actinomycetes. Proc Natl Acad Sci 107(30):13461–13466

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Gribble GW (2010) Naturally occurring organohalogen compounds-A comprehensive update. In: Progress in the chemistry of natural products, vol 91. Springer-Verlag Wien p 1–1

  • Harris CM, Kannan R, Kopecka H, Harris TM (1985) The role of the chlorine substituents in the antibiotic vancomycin: preparation and characterization of mono-and didechlorovancomycin. J Am Chem Soc 107(23):6652–6658

    Article  CAS  Google Scholar 

  • Hoertz AJ, Hamburger JB, Gooden DM, Bednar MM, McCafferty DG (2012) Studies on the biosynthesis of the lipodepsipeptide antibiotic ramoplanin A2. Bioorg Med Chem 20(2):859–865. doi:10.1016/j.bmc.2011.11.062

    Article  PubMed  CAS  Google Scholar 

  • Hu Y, Helm JS, Chen L, Ye X-Y, Walker S (2003) Ramoplanin inhibits bacterial transglycosylases by binding as a dimer to lipid II. J Am Chem Soc 125(29):8736–8737

    Article  PubMed  CAS  Google Scholar 

  • Keller S, Wage T, Hohaus K, Hölzer M, Eichhorn E, van Pée KH (2000) Purification and partial characterization of tryptophan 7-halogenase (PrnA) from Pseudomonas fluorescens. Angew Chem Int Ed 39(13):2300–2302

    Article  CAS  Google Scholar 

  • Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical streptomyces genetics. John Innes Foundation Norwich, UK

    Google Scholar 

  • Lo M-C, Men H, Branstrom A, Helm J, Yao N, Goldman R, Walker S (2000) A new mechanism of action proposed for ramoplanin. J Am Chem Soc 122(14):3540–3541

    Article  CAS  Google Scholar 

  • MacNeil DJ, Gewain KM, Ruby CL, Dezeny G, Gibbons PH, MacNeil T (1992) Analysis of Streptomyces avermitilis genes required for avermectin biosynthesis utilizing a novel integration vector. Gene 111(1):61–68

    Article  PubMed  CAS  Google Scholar 

  • McCafferty DG, Cudic P, Frankel BA, Barkallah S, Kruger RG, Li W (2002) Chemistry and biology of the ramoplanin family of peptide antibiotics. Pept Sci 66(4):261–284

    Article  CAS  Google Scholar 

  • Neumann CS, Fujimori DG, Walsh CT (2008) Halogenation strategies in natural product biosynthesis. Chem Biol 15(2):99–109

    Article  PubMed  CAS  Google Scholar 

  • Paknikar SS, Narayana S (2012) Newer antibacterials in therapy and clinical trials. N Am J Med Sci 4(11):537

    Article  PubMed  PubMed Central  Google Scholar 

  • Pelaez T, Alcala L, Alonso R, Martín-López A, García-Arias V, Marín M, Bouza E (2005) In vitro activity of ramoplanin against Clostridium difficile, including strains with reduced susceptibility to vancomycin or with resistance to metronidazole. Antimicrob Agents Chemother 49(3):1157–1159

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Puk O, Bischoff D, Kittel C, Pelzer S, Weist S, Stegmann E, Süssmuth RD, Wohlleben W (2004) Biosynthesis of chloro-β-hydroxytyrosine, a nonproteinogenic amino acid of the peptidic backbone of glycopeptide antibiotics. J Bacteriol 186(18):6093–6100. doi:10.1128/jb.186.18.6093-6100.2004

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Rolston K, Dholakia N, Ho D, LeBlanc B, Dvorak T, Streeter H (1996) In-vitro activity of ramoplanin (a novel lipoglycopeptide), vancomycin, and teicoplanin against Gram-positive clinical isolates from cancer patients. J Antimicrob Chemother 38(2):265–269

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Thomas MG, Burkart MD, Walsh CT (2002) Conversion of L-proline to pyrrolyl-2-carboxyl-S-PCP during undecylprodigiosin and pyoluteorin biosynthesis. Chem Biol 9(2):171–184

    Article  PubMed  CAS  Google Scholar 

  • Wagner C, El Omari M, König GM (2009) Biohalogenation: nature’s way to synthesize halogenated metabolites. J Nat Prod 72(3):540–553. doi:10.1021/np800651m

    Article  PubMed  CAS  Google Scholar 

  • Wu Y, Kang Q, Shen Y, Su W, Bai L (2011) Cloning and functional analysis of the naphthomycin biosynthetic gene cluster in Streptomyces sp. CS. Mol Biosyst 7(8):2459–2469. doi:10.1039/C1MB05036B

    Article  PubMed  CAS  Google Scholar 

  • Yeh E, Garneau S, Walsh CT (2005) Robust in vitro activity of RebF and RebH, a two-component reductase/halogenase, generating 7-chlorotryptophan during rebeccamycin biosynthesis. Proc Natl Acad Sci U S A 102(11):3960–3965

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Yin X, Chen Y, Zhang L, Wang Y, Zabriskie TM (2010) Enduracidin analogues with altered halogenation patterns produced by genetically engineered strains of Streptomyces fungicidicus. J Nat Prod 73(4):583–589

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Zeng J, Zhan J (2010) A novel fungal flavin-dependent halogenase for natural product biosynthesis. Chembiochem 11(15):2119–2123. doi:10.1002/cbic.201000439

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Lei Shao or Dai-Jie Chen.

Ethics declarations

Funding

This work was funded in part by grants from the National Natural Science Foundation of China (81373310) and Ministry of Science and Technology of China (Grant No. 2012ZX09301002-003).

Conflict of interest

The authors declare that they have no competing interests.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Chen, JS., Su, M., Shao, L. et al. Investigation of halogenation during the biosynthesis of ramoplanin in Actinoplanes sp. ATCC33076. Appl Microbiol Biotechnol 100, 289–298 (2016). https://doi.org/10.1007/s00253-015-7014-2

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-015-7014-2

Keywords

Navigation