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Towards an effective biosensor for monitoring AD leachate: a knockout E. coli mutant that cannot catabolise lactate

  • Applied microbial and cell physiology
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Abstract

Development of a biosensor for the convenient measurement of acetate and propionate concentrations in a two-phase anaerobic digestor (AD) requires a bacterium that will be unresponsive to the other organic acids present in the leachate, of which lactate is the most abundant. Successive gene knockouts of E.coli W3110 d-lactate dehydrogenase (dld), l-lactate dehydrogenase (lldD), glycolate oxidase (glcD) and a suspected l-lactate dehdrogenase (ykgF) were performed. The resulting quadruple mutant (IMD Wldgy) was incapable of growth on d- and l-lactate, whereas the wild type grew readily on these substrates. Furthermore, the O2 consumption rates of acetate-grown IMD Wldgy cell suspensions supplied with either acetate (0.1 mM) or a synthetic leachate including acetate (0.1 mM) and dl-lactate (1 mM) were identical (2.79 and 2.70 mg l−1 min−1, respectively). This was in marked contrast to similar experiments with the wild type which gave initial O2 consumption rates of 2.00, 2.36 and 2.97 mg l−1 min−1 when cell suspensions were supplied with acetate (0.1 mM), acetate (0.1 mM) plus d-lactate (1 mM) or acetate (0.1 mM) plus l-lactate (1 mM), respectively. The knockout strain provides a platform for the design of a biosensor that can accessibly monitor acetate and propionate concentrations in AD leachate via O2-uptake measurements.

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References

  • Ahring BK, Sandberg M, Angelidaki I (1995) Volatile fatty acids as indicators of process imbalance in anaerobic digestors. Appl Microbiol Biotechnol 43:559–565

    Article  CAS  Google Scholar 

  • Andersson J, Björnsson L (2002) Evaluation of straw as a biofilm carrier in the methanogenic stage of two-stage anaerobic digestion of crop residues. Bioresour Technol 85:51–56

    Article  CAS  PubMed  Google Scholar 

  • Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko K.a, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006.0008.

  • Björnsson L, Hornsten EG, Mattiasson B (2001) Utilization of a palladium—metal oxide semiconductor (Pd-MOS) sensor for on-line monitoring of dissolved hydrogen in anaerobic digestion. Biotechnol Bioeng 73:35–43

    Article  PubMed  Google Scholar 

  • Chai Y, Kolter R, Losick R (2009) A widely conserved gene cluster required for lactate utilization in Bacillus subtilis and its involvement in biofilm formation. J Bacteriol 191:2423–2430

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Cherepanov PP, Wackernagel W (1995) Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalysed excision of the antibiotic-resistance determinant. Gene 158:9–14

    Article  CAS  PubMed  Google Scholar 

  • Cirne D, Lehtomäki A, Björnsson L, Blackall LL (2007) Hydrolysis and microbial community analyses in two-stage anaerobic digestion of energy crops. J Appl Microbiol 103:516–527

    Article  CAS  PubMed  Google Scholar 

  • Comprehensive Molecular BioEngineering (CMBE) (2010) P1vir Transduction protocol. In: (CMBE Lab. Protoc. Data. http://www.cmbe.engr.uga.edu/protocols/P1vir Transductions.pdf. Accessed 11 May 2015.

  • Datsenko Ka, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640–6645

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hikuma M, Yasuda T, Karube I, Suzuki S (1981) Application of microbial sensors to the fermentation process. Ann N Y Acad Sci 369:307–320

    Article  CAS  Google Scholar 

  • Lehtomäki A, Björnsson L (2006) Two-stage anaerobic digestion of energy crops: methane production, nitrogen mineralisation and heavy metal mobilisation. Environ Technol 27:209–218

    Article  PubMed  Google Scholar 

  • Liu J, Mattiasson B (2002) Microbial BOD sensors for wastewater analysis. Water Res 36:3786–3802

    Article  CAS  PubMed  Google Scholar 

  • Lord JM (1972) Glycolate oxidoreductase in Escherichia coli. Biochim Biophys Acta 267:227–237

    Article  CAS  PubMed  Google Scholar 

  • Man WJ, Li Y, O’Connor CD, Wilton DC (1995) The binding of propionyl-CoA and carboxymethyl-CoA to Escherichia coli citrate synthase. Biochim Biophys Acta 1250:69–75

    Article  PubMed  Google Scholar 

  • Nizami AS, Korres NE, Murphy JD (2009) Review of the integrated process for the production of grass biomethane. Environ Sci Technol 43:8496–8508

    Article  CAS  PubMed  Google Scholar 

  • Nizami AS, Murphy JD (2010) What type of digester configurations should be employed to produce biomethane from grass silage? Renew Sust Energ Rev 14:1558–1568

    Article  CAS  Google Scholar 

  • Nizami AS, Murphy JD (2011) Optimizing the operation of a two-phase anaerobic digestion system digesting grass silage. Environ Sci Technol 45:7561–7569

    Article  CAS  PubMed  Google Scholar 

  • Pellicer MT, Badía J, Aguilar J, Baldomà L (1996) glc locus of Escherichia coli : characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein. J Bacteriol 178:2051–2059

    PubMed Central  CAS  PubMed  Google Scholar 

  • Pellicer MT, Fernandez C, Badía J, Aguilar J, Lin ECC, Baldomà L (1999) Cross-induction of glc and ace operons of Escherichia coli attributable to pathway intersection. Characterization of the glc promoter. J Biol Chem 274:1745–1752

    Article  CAS  PubMed  Google Scholar 

  • Pinchuk GE, Rodionov Da, Yang C, Li X, Osterman AL, Dervyn E, Geydebrekht OV, Reed SB, Romine MF, Collart FR, Scott JH, Fredrickson JK, Beliaev AS (2009) Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Proc Natl Acad Sci U S A 106:2874–2879

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Pind PF, Angelidaki I, Ahring BK (2003) Dynamics of the anaerobic process: effects of volatile fatty acids. Biotechnol Bioeng 82:791–801

    Article  CAS  PubMed  Google Scholar 

  • Rajashekhara E, Hosoda A, Sode K, Ikenaga H, Watanabe K (2006) Volatile fatty acid-sensing system involving coenzyme-A transferase. Biotechnol Prog 22:334–337

    Article  CAS  PubMed  Google Scholar 

  • Tarmy EM, Kaplan NO (1968) Kinetics of Escherichia coli B D-lactate dehydrogenase and evidence for pyruvate-controlled change in conformation. J Biol Chem 243:2587–2596

    CAS  PubMed  Google Scholar 

  • Textor S, Wendisch VF, De Graaf A a, Müller U, Linder MI, Linder D, Buckel W (1997) Propionate oxidation in Escherichia coli: evidence for operation of a methylcitrate cycle in bacteria. Arch Microbiol 168:428–436

    Article  CAS  PubMed  Google Scholar 

  • Wang Y, Zhang Y, Wang J, Meng L (2009) Effects of volatile fatty acids on methane yield and methanogenic bacteria. Biomass Bioenergy 33:848–853

    Article  CAS  Google Scholar 

  • Zeravik J, Lacina K, Jilek M, Vlcek J, Skládal P (2010) Biosensor for determination of carboxylic acids in wines based on the inhibition of sarcosine oxidase. Microchim Acta 170:251–256

    Article  CAS  Google Scholar 

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Acknowledgments

This publication has emanated from research conducted with the financial support of Science Foundation Ireland/Charles Parsons Energy Research Programme. The authors thank Joseph O’Neill for the help in setting up the DO probe.

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The authors declare that they have no competing interests.

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Correspondence to Cormac D. Murphy.

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Sweeney, J., Murphy, C.D. & McDonnell, K. Towards an effective biosensor for monitoring AD leachate: a knockout E. coli mutant that cannot catabolise lactate. Appl Microbiol Biotechnol 99, 10209–10214 (2015). https://doi.org/10.1007/s00253-015-6887-4

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  • DOI: https://doi.org/10.1007/s00253-015-6887-4

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