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The starch-binding domain as a tool for recombinant protein purification

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A Correction to this article was published on 18 September 2021

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Abstract

Recombinant protein purification with affinity tags is a widely employed technique. One of the most common tags used for protein purification is the histidine tag (Histag). In this work, we use a tandem starch-binding domain (SBDtag) as a tag for protein purification. Four proteins from different sources were fused to the SBDtag, and the resulting fusion proteins were purified by affinity chromatography using the Histag or the SBDtag. The results showed that the SBDtag is superior to the Histag for protein purification. The efficient adsorption of the fusion proteins to raw corn starch was also demonstrated, and two fusions were selected to test purification directly using raw starch from rice, corn, potato, and barley. The two fusion proteins were successfully recovered from crude bacterial extract using raw starch, thus demonstrating that the SBDtag can be used as an efficient affinity tag for recombinant protein purification on an inexpensive matrix.

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References

  • Arnau J, Lauritzen C, Petersen GE, Pedersen J (2006) Current strategies for the use of affinity tags and tag removal for the purification of recombinant proteins. Protein Expr Purif 48:1–13

    Article  CAS  Google Scholar 

  • Belshaw NJ, Williamson G (1990) Production and purification of a granular-starch-binding domain of glucoamylase 1 from Aspergillus niger. FEBS Lett 269:350–353

    Article  CAS  Google Scholar 

  • Carrero SJC (1998) Inmunización oral on antígenos de Entamoeba histolytica clonados a través de anticuerpos IgA secretores. Tesis de doctorado en IBB, UNAM

    Google Scholar 

  • Chen L, Coutinho PM, Nikolov Z, Ford C (1995) Deletion analysis of the starch-binding domain of Aspergillus glucoamylase. Protein Eng 8:1049–1055

    Article  CAS  Google Scholar 

  • Emsley P, Fotinou C, Black I, Fairweather NF, Charles IG, Watts C, Hewitt E, Isaacs NW (2000) The structures of the HC fragment of tetanus toxin with carbohydrate subunit complexes provide insight into ganglioside binding. J Biol Chem 275:8889–8894

    Article  CAS  Google Scholar 

  • Guillen D, Santiago M, Linares L, Pérez R, Morlon J, Sánchez S, Rodríguez-Sanoja R (2007) Alpha-amylase starch binding domains: cooperative effects of binding to starch granules of multiple tandemly arranged domains. Appl Environ Microbiol 73:3833–3837

    Article  CAS  Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Article  CAS  Google Scholar 

  • Liao H, Myung S, Zhang Y-HP (2012) One-step purification and immobilization of thermophilic polyphosphate glucokinase from Thermobifida fusca YX: glucose-6-phosphate generation without ATP. Appl Microbiol Biotechnol 93:1109–1117

    Article  CAS  Google Scholar 

  • Lichty JJ, Malecki JL, Agnew HD, Michelson-Horowitz DJ, Tan S (2005) Comparison of affinity tags for protein purification. Protein Expr Purif 41:98–105

    Article  CAS  Google Scholar 

  • Lin S-C, Lin IP, Chou W-I, Hsieh C-A, Liu S-H, Huang R-Y, Sheu C-C, Chang MD-T (2009) CBM21 starch-binding domain: a new purification tag for recombinant protein engineering. Protein Expr Purif 65:261–266

    Article  CAS  Google Scholar 

  • Olvera CF, Rodríguez-Sanoja R, Prieto GF, Román GAD (2012) Caracterización física y química proximal de paja, grano y almidón de cebada de la variedad esmeralda. Bio/Technol 16:9–20

    Google Scholar 

  • Osuna J (1989) Aislamiento de un fragmento inmunogénico de toxina tetánica. Tesis de maestría en IBB, UNAM

    Google Scholar 

  • Rodríguez-Sanoja R, Oviedo N, Sanchez S (2005a) Microbial starch binding domains. Curr Opin Microbiol 8:260–267

    Article  Google Scholar 

  • Rodríguez-Sanoja R, Ruiz B, Guyot JP, Sanchez S (2005b) The starch binding domain affects catalysis in two Lactobacillus α-amylases. Appl Environ Microbiol 71:297–302

    Article  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Michigan

    Google Scholar 

  • Structural Genomics Consortium AeFdMB, Berkeley Structural Genomics Center, China Structural Genomics Consortium, Integrated Center for Structure and Function Innovation, Israel Structural Proteomics Center, Joint Center for Structural Genomics, Midwest Center for Structural Genomics, New York Structural Genomics Research Center for Structural Genomics, Northeast Structural Genomics Consortium, Oxford Protein Production Facility, Protein Sample Production Facility, Max Delbrück Center for Molecular Medicine, RIKEN Structural Genomics/Proteomics Initiative and SPINE2-Complexes (2008) Protein production and purification. Nat Meth 5:135–146

    Article  Google Scholar 

  • Terpe K (2003) Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems. Appl Microbiol Biotechnol 60:523–533

    CAS  Google Scholar 

  • Vretblad P (1974) Immobilization of ligands for biospecific affinity chromatography VIA their hydroxyl groups. The cyclohexaamylose-beta-amylase system. FEBS Lett 47:86–89

    Article  CAS  Google Scholar 

  • Wan W, Wang D, Gao X, Hong J (2011) Expression of family 3 cellulose-binding module (CBM3) as an affinity tag for recombinant proteins in yeast. Appl Microbiol Biotechnol 91:789–798

    Article  CAS  Google Scholar 

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Acknowledgment

D. Guillén, S Moreno-Mendieta, and P. Aguilera were supported by personal grants from Consejo Nacional de Ciencia y Tecnología (CONACyT) México. This work is supported by UNAM-DGAPA grants IN209410-3, IN222113, and CONACYT grant 131149. We thank Beatriz Ruiz, Laura Escalante, and María Elena Munguía for technical assistance.

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Correspondence to R. Rodríguez-Sanoja.

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Guillén, D., Moreno-Mendieta, S., Aguilera, P. et al. The starch-binding domain as a tool for recombinant protein purification. Appl Microbiol Biotechnol 97, 4141–4148 (2013). https://doi.org/10.1007/s00253-013-4778-0

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  • DOI: https://doi.org/10.1007/s00253-013-4778-0

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