Skip to main content

Advertisement

Log in

Distribution Characteristics of Bacterial Communities and Hydrocarbon Degradation Dynamics During the Remediation of Petroleum-Contaminated Soil by Enhancing Moisture Content

  • Soil Microbiology
  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

Microorganisms are the driver of petroleum hydrocarbon degradation in soil micro-ecological systems. However, the distribution characteristics of microbial communities and hydrocarbon degradation dynamics during the remediation of petroleum-contaminated soil by enhancing moisture content are not clear. In this study, polymerase chain reaction and high-throughput sequencing of soil microbial DNA were applied to investigate the compositions of microorganisms and alpha diversity in the oil-polluted soil, and the hydrocarbon removal also being analyzed using ultrasonic extraction and gravimetric method in a laboratory simulated ex-situ experiment. Results showed the distribution of petroleum hydrocarbon degrading microorganisms in the petroleum-contaminated loessal soil mainly was Proteobacteria phylum (96.26%)—Gamma-proteobacteria class (90.03%)—Pseudomonadales order (89.98%)—Pseudomonadaceae family (89.96%)—Pseudomonas sp. (87.22%). After 15% moisture content treatment, Actinobacteria, Proteobacteria, and Firmicutes still were the predominant phyla, but their relative abundances changed greatly. Also Bacillus sp. and Promicromonospora sp. became the predominant genera. Maintaining 15% moisture content increased the relative abundance of Firmicutes phylum and Bacillus sp. As the moisture-treated time increases, the uniformity and the richness of the soil bacterial community were decreased and increased respectively; the relative abundance of Pseudomonas sp. increased. Petroleum hydrocarbon degradation by enhancing soil moisture accorded with the pseudo-first-order reaction kinetic model (correlation coefficient of 0.81; half-life of 56 weeks). The richness of Firmicutes phylum and Bacillus sp. may be a main reason for promoting the removal of 18% petroleum hydrocarbons responded to 15% moisture treatment. Our results provided some beneficial microbiological information of oil-contaminated soil and will promote the exploration of remediation by changing soil moisture content for increasing petroleum hydrocarbon degradation efficiency.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Cho E, Park M, Hur M, Kang GY, Kim S (2019) Molecular-level investigation of soils contaminated by oil spilled during the Gulf War. J. Hazard. Mater 373:271–277

    Article  CAS  Google Scholar 

  2. Gao H, Zhang J, Lai HX, Xue QH (2017) Degradation of asphaltenes by two Pseudomonas aeruginosa strains and their effects on physicochemical properties of crude oil. Int. Biodeterior. Biodegradation 122:12–22

    Article  CAS  Google Scholar 

  3. Shahi A, Aydin S, Ince B, Ince O (2016) Reconstruction of bacterial community structure and variation for enhanced petroleum hydrocarbons degradation through biostimulation of oil contaminated soil. Chem. Eng. J 306:60–66

    Article  CAS  Google Scholar 

  4. Wang SY, Kuo YC, Hong A, Chang YM, Kao CM (2016) Bioremediation of diesel and lubricant oil-contaminated soils using enhanced landfarming system. Chemosphere 164:558–567

    Article  CAS  Google Scholar 

  5. Wu ML, Ye XQ, Chen KL, Li W, Yuan J, Jiang X (2017) Bacterial community shift and hydrocarbon transformation during bioremediation of short-term petroleum-contaminated soil. Environ. Pollut 223:657–664

    Article  CAS  Google Scholar 

  6. Xu JL, Zhao MH, Wang R, Du J, Zhang QJ (2019) Efficiently dedicated oxidation of long-chain crude oil in the soil by inactive SOM-Fe. Chem. Eng. J. https://doi.org/10.1016/j.cej.2019.121913

  7. He J, Fan XR, Liu H, He XT, Wang QZ, Liu Y, Wei HF, Wang B (2019) The study on Suaeda heteroptera Kitag, Nereis succinea and bacteria's joint bioremediation of oil-contaminated soil. Microchem. J 147:872–878

    Article  CAS  Google Scholar 

  8. Whelan MJ, Coulon F, Hince G, Rayner J, McWatters R, Spedding T, Snape I (2015) Fate and transport of petroleum hydrocarbons in engineered biopiles in polar regions. Chemosphere 131:232–240

    Article  CAS  Google Scholar 

  9. Wu ML, Wu JL, Zhang XH, Ye XQ (2019) Effect of bioaugmentation and biostimulation on hydrocarbon degradation and microbial community composition in petroleum-contaminated loessal soil. Chemosphere. https://doi.org/10.1016/j.chemosphere.2019.124456

  10. Roy A, Dutta A, Pal S, Gupta A, Sarkar J, Chatterjee A, Saha A, Sarkar P, Sar P, Kazy SK (2018) Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge. Bioresour. Technol 253:22–32

    Article  CAS  Google Scholar 

  11. Abed RMM, Al-Kharusi S, Al-Hinai M (2015) Effect of biostimulation, temperature and salinity on respiration activities and bacterial community composition in an oil polluted desert soil. Int. Biodeterior. Biodegrad 98:43–52

    Article  CAS  Google Scholar 

  12. Ali H, Mohammad HF, Mahin S (2016) The effect of soil type on the bioremediation of petroleum contaminated soils. J. Environ. Manag 180:197–201

    Article  Google Scholar 

  13. Wu ML, Li W, Warren AD, Ye XQ, Chen LM (2017) Bioremediation of hydrocarbon degradation in a petroleum-contaminated soil and microbial population and activity determination. Chemosphere 169:124–130

    Article  CAS  Google Scholar 

  14. Gao H, Zhang J, Lai HX, Xue QH (2017) Degradation of asphaltenes by two Pseudomonas aeruginosa strains and their effects on physicochemical properties of crude oil. Int. Biodeterior. Biodegradation 122:12–22

    Article  CAS  Google Scholar 

  15. Xu JL, Zhang QJ, Li DY, Du J, Wang C, Qin JY (2019) Rapid degradation of long-chain crude oil in soil by indigenous bacteria using fermented food waste supernatant. Waste Manag 85:361–373

    Article  CAS  Google Scholar 

  16. Whelan MJ, Coulon F, Hince G, Rayner J, McWatters R, Spedding T, Snape I (2015) Fate and transport of petroleum hydrocarbons in engineered biopiles in polar regions. Chemosphere 131:232–240

    Article  CAS  Google Scholar 

  17. Trellu C, Mousseta E, Pechaud Y, Huguenot D, Hullebusch EDV, Esposito G, Oturan MA (2016) Removal of hydrophobic organic pollutants from soil washing/flushing solutions: a critical review. J. Hazard. Mater 306:149–174

    Article  CAS  Google Scholar 

  18. Onotasamiderhi TI, Paola M, Russell JD, David W (2019) Impacts of activated carbon amendments, added from the start or after five months, on the microbiology and outcomes of crude oil bioremediation in soil. Int. Biodeterior. Biodegradation 142:1–10

    Article  Google Scholar 

  19. Chang W, Dyen M, Spagnuolo L, Simon P, Whyte L, Ghoshal S (2010) Biodegradation of semi- and non-volatile petroleum hydrocarbons in aged, contaminated soils from a sub-arctic site: laboratory pilot-scale experiments at site temperatures. Chemosphere 80:319–326

    Article  CAS  Google Scholar 

  20. Gomez F, Sartaj M (2013) Field scale ex-situ bioremediation of petroleum contaminated soil under cold climate conditions. Int. Biodeterior. Biodegradation 85:375–382

    Article  CAS  Google Scholar 

  21. Paudyn K, Rutter A, Rowe RK, Poland JS (2008) Remediation of hydrocarbon contaminated soils in the Canadian Arctic by landfarming. Cold Reg. Sci. Technol 53:102–114

    Article  Google Scholar 

  22. Karthick A, Roy B, Chattopadhyay P (2019) A review on the application of chemical surfactant and surfactant foam for remediation of petroleum oil contaminated soil. J. Environ. Manag 243:187–205

    Article  CAS  Google Scholar 

  23. Wang SY, Kuo YC, Hong A, Chang YM, Kao CM (2016) Bioremediation of diesel and lubricant oil-contaminated soils using enhanced landfarming system. Chemosphere 164:558–567

    Article  CAS  Google Scholar 

  24. Schjønning P, Thomsen IK, Petersen SO, Kristensen K, Christensen BT (2011) Relating soil microbial activity to water content and tillage-induced differences in soil structure. Geoderma 163:256–264

    Article  Google Scholar 

  25. Sigouin MJP, Dyck M, Si BC, Hu W (2016) Monitoring soil water content at a heterogeneous oil sand reclamation site using a cosmic-ray soil moisture probe. J. Hydrol 543:510–522

    Article  Google Scholar 

  26. Zhang HH, Feng J, Chen SN, Zhao ZF, Li BQ, Wang Y (2019) Geographical patterns of nirs gene abundance and nirs-type denitrifying bacterial community associated with activated sludge from different wastewater treatment plants. Microb. Ecol 77:304–316

    Article  CAS  Google Scholar 

  27. Meynet P, Hale SE, Davenport RJ, Cornelissen G, Breedveld GD, Werner D (2012) Effect of activated carbon amendment on bacterial community structure and functions in a PAH impacted urban soil. Environ Sci Technol 46:5057–5066

    Article  CAS  Google Scholar 

  28. Li XX, Fan FQ, Zhang BY, Zhang KD, Chen B (2018) Biosurfactant enhanced soil bioremediation of petroleum hydrocarbons: design of experiments (DOE) based system optimization and phospholipid fatty acid (PLFA) based microbial community analysis. Int. Biodeterior. Biodegradation 132:216–225

    Article  CAS  Google Scholar 

  29. Wu ML, Wu JL, Zhang XH, Ye XQ (2019) Effect of bioaugmentation and biostimulation on hydrocarbon degradation and microbial community composition in petroleum-contaminated loessal soil. Chemosphere. https://doi.org/10.1016/j.chemosphere.2019.124456

  30. Qu YY, Zhang XW, Shen WL, Ma Q, You SN, Pei XF, Li SZ, Ma F, Zhou JT (2016) Illumina MiSeq sequencing reveals long-term impacts of single-walled carbon nanotubes on microbial communities of wastewater treatment systems. Bioresour. Technol 211:209–215

    Article  CAS  Google Scholar 

  31. Wu ML, Dick WA, Li W, Wang XC, Yang Q, Wang TT, Xu LM, Zhang MH, Chen LM (2016) Bioaugmentation and biostimulation of hydrocarbon degradation and the microbial community in a petroleum-contaminated soil. Int. Biodeterior. Biodegradation 107:158–164

    Article  CAS  Google Scholar 

  32. Hou JY, Liu WX, Wang BB, Wang QL, Franks AE (2015) PGPR enhanced phytoremediation of petroleum contaminated soil and rhizosphere microbial community response. Chemosphere 138:592–598

    Article  CAS  Google Scholar 

  33. Vasileva-Tonkova E, Gesheva V (2005) Glycolipids produced by antarctic Nocardioides sp. during growth on n-paraffin. Process Biochem 40:2387–2391

    Article  CAS  Google Scholar 

  34. Mohanty G, Mukherji S (2008) Biodegradation rate of diesel range n-alkanes by bacterial cultures exiguobacterium aurantiacum and burkholderia cepacia. Int. Biodeterior. Biodegradation 61:240–250

    Article  CAS  Google Scholar 

  35. Zhang DC, Mörtelmaier C, Margesin R (2012) Characterization of the bacterial archaeal diversity in hydrocarbon-contaminated soil. Sci. Total Environ 421–422:184–196

    Article  Google Scholar 

  36. Kim T, Hong JK, Jho EH, Kang GY, Lee SJ (2019) Sequential biowashing-biopile processes for remediation of crude oil contaminated soil in Kuwait. J Hazard Mater:378. https://doi.org/10.1016/j.jhazmat.2019.05.103

  37. Bacosa H, Suto K, Inoue C (2010) Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. Int Biodeterior Biodegr 64:702–710

    Article  CAS  Google Scholar 

  38. Das N, Chandran P (2011) Microbial degradation of petroleum hydrocarbon contaminants: an overview. Biotechnol. Res. Int. https://doi.org/10.4061/2011/941810

  39. Ramadass K, Megharaj M, Venkateswarlu K, Naidu R (2018) Bioavailability of weathered hydrocarbons in engine oil-contaminated soil: impact of bioaugmentation mediated by pseudomonas, spp. on bioremediation. Sci. Total Environ 636:968–974

    Article  CAS  Google Scholar 

  40. He SY, Ni YQ, Lu L, Chai QW, Yu T, Shen ZhQ Yang CP (2020) Simultaneous degradation of n-hexane and production of biosurfactants by Pseudomonas sp. strain NEE2 isolated from oil-contaminated soils. Chemosphere 242: https://doi.org/10.1016/j.chemosphere.2019.125237

  41. Trellu C, Mousseta E, Pechaud Y, Huguenot D, Hullebusch EDV, Esposito G, Oturan MA (2016) Removal of hydrophobic organic pollutants from soil washing/flushing solutions: a critical review. J. Hazard. Mater 306:149–174

    Article  CAS  Google Scholar 

  42. Almansoory AF, Hasan HA, Idris M, Abdullah SRS, Anuar N (2015) Potential application of a biosurfactant in phytoremediation technology for treatment of gasoline-contaminated soil. Ecol. Eng 84:113–120

    Article  Google Scholar 

  43. Santos EVD, Sáez C, Cañizares P, Silva DRD, Rodrigo MA (2017) Treatment of ex-situ soil-washing fluids polluted with petroleum by anodic oxidation, photolysis, sonolysis and combined approaches. Chem. Eng. J 310:581–588

    Article  Google Scholar 

  44. Marie TBA, Li TT, Shah MN, Zhong WH (2019) Biodegradation of total petroleum hydrocarbons (TPH) in highly contaminated soils by natural attenuation and bioaugmentation. Chemosphere 234:864–874

    Article  Google Scholar 

  45. Varjani SJ (2017) Microbial degradation of petroleum hydrocarbons. Bioresour. Technol 223:277–286

    Article  CAS  Google Scholar 

  46. Cristina MQ, Ana MTM, Leandro CPL (2019) Overview of bioremediation with technology assessment and emphasis on fungal bioremediation of oil contaminated soils. J. Environ. Manag 241:156–166

    Article  Google Scholar 

Download references

Funding

This work was supported by the National Natural Science Foundation of China (No. 21577109), the Program for Innovative Research Team in Shaanxi (PIRT) (Grant No. 2013KCT-13), the Natural Science Foundation of Shaanxi Province (2015JM5163), and the Key Laboratory Project of the Shaanxi Provincial Education Department (13JS048).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Manli Wu.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Liu, H., Gao, H., Wu, M. et al. Distribution Characteristics of Bacterial Communities and Hydrocarbon Degradation Dynamics During the Remediation of Petroleum-Contaminated Soil by Enhancing Moisture Content. Microb Ecol 80, 202–211 (2020). https://doi.org/10.1007/s00248-019-01476-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00248-019-01476-7

Keywords

Navigation