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Noviherbaspirillum galbum sp. nov., a bacterium isolated from soil

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Abstract

A Gram-stain-negative, aerobic, non-motile and yellow-colored bacterium, strain 17J57-3 T, was isolated from soil collected in Pyeongchang city, Korea. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain 17J57-3 T formed a distinct lineage within the family Oxalobacteraceae (order Burkholderiales, class Betaproteobacteria). Strain 17J57-3 T was the most closely related to Noviherbaspirillum humi U15T (96.4% 16S rRNA gene sequence similarity) and Noviherbaspirillum massiliense JC206T (96.2%). The draft genome size of strain 17J57-3 T was 6,117,206 bp. Optimal growth occurred at 30 °C, pH 7.0 without NaCl. The predominant cellular fatty acids were summed feature 3 (C16:1 ω6c/C16:1 ω7c) and C16:0. The major respiratory quinone was Q-8. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Biochemical, chemotaxonomic and phylogenetic analyses indicated that strain 17J57-3 T represents a novel bacterial species within the genus Noviherbaspirillum, for which the name Noviherbaspirillum galbum is proposed. The type strain of Noviherbaspirillum galbum is 17J57-3 T (= KCTC 62213 T = NBRC 114384 T).

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Acknowledgements

This work was supported by a research grant from the National Institute of Biological Resources (NIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NIBR201902203). This work was carried out with the support of “Cooperative Research Program for Agriculture Science and Technology Development (Project No. PJ01505201)” Rural Development Administration, Republic of Korea. This research was supported by the MISP (Ministry of Science, ICT and Future Planning), Korea, under the National Program for Excellence in SW) (2016-0-00022) supervised by the IITP(Institute of Information and communications Technology Planning and Evaluation). We are grateful to Dr. Aharon Oren (The Hebrew University of Jerusalem, Israel) for helping with the etymology. The GenBank accession numbers for the 16S rRNA gene sequences of strain 17J57-3T is MN396447. The whole-genome sequences of strain 17J57-3T have been deposited into DDBJ/EMBL/GenBank under the accession numbers JAAIVB000000000.

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Authors and Affiliations

  1. Department of Bio and Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul, 01797, Republic of Korea

    Yuna Park, Soohyun Maeng, Sang Eun Lee, Joo Hyun Han, Ju Hyeon Kang & Myung Kyum Kim

  2. Plasma Technology Research Center, National Fusion Research Institute, Gunsan-Si, Jeollabuk-Do, 54004, Republic of Korea

    Young Koung Lee & Jaesung Oh

  3. Department of Mongolian Medicine Study, International School of Mongolian Medicine, Mongolian National University of Medical Sciences, Ulaanbaatar, Mongolia

    Baigalmaa Jigden

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  1. Yuna Park
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Park, Y., Maeng, S., Lee, S.E. et al. Noviherbaspirillum galbum sp. nov., a bacterium isolated from soil. Arch Microbiol 203, 823–828 (2021). https://doi.org/10.1007/s00203-020-02076-7

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